miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20573 5' -60.3 NC_004688.1 + 13217 0.66 0.690332
Target:  5'- uGGCGGGGgCaaCCCCUGGAGcACcgGUu -3'
miRNA:   3'- -CCGCCCCgGcgGGGGGCUUUaUGa-CG- -5'
20573 5' -60.3 NC_004688.1 + 66294 0.66 0.690332
Target:  5'- cGGCGGGGCCGaucguguaCgUCC--AGUGCgGCg -3'
miRNA:   3'- -CCGCCCCGGCg-------GgGGGcuUUAUGaCG- -5'
20573 5' -60.3 NC_004688.1 + 46960 0.66 0.689336
Target:  5'- cGGCGGGGCgUGCCguaacaaggccgaCCgCGGugAAUGCggugGCa -3'
miRNA:   3'- -CCGCCCCG-GCGG-------------GGgGCU--UUAUGa---CG- -5'
20573 5' -60.3 NC_004688.1 + 21073 0.66 0.67035
Target:  5'- -uCGGGGCCGCgCCagCCGGGAggcuuCUGg -3'
miRNA:   3'- ccGCCCCGGCG-GGg-GGCUUUau---GACg -5'
20573 5' -60.3 NC_004688.1 + 96816 0.66 0.67035
Target:  5'- gGGUGGuuGGgCGCCCCgCCGAGcaagACgaucgGCa -3'
miRNA:   3'- -CCGCC--CCgGCGGGG-GGCUUua--UGa----CG- -5'
20573 5' -60.3 NC_004688.1 + 84096 0.66 0.66031
Target:  5'- aGCGGGGCUGgCCCgCGgcGUA--GCu -3'
miRNA:   3'- cCGCCCCGGCgGGGgGCuuUAUgaCG- -5'
20573 5' -60.3 NC_004688.1 + 36820 0.66 0.650248
Target:  5'- uGCGGGuggugagcGCCGCCCCaUCGggGgugaggGCUacGCa -3'
miRNA:   3'- cCGCCC--------CGGCGGGG-GGCuuUa-----UGA--CG- -5'
20573 5' -60.3 NC_004688.1 + 27486 0.66 0.640172
Target:  5'- aGGCGGaGGCgGCUgaucgugCCCGGc-UGCUGCu -3'
miRNA:   3'- -CCGCC-CCGgCGGg------GGGCUuuAUGACG- -5'
20573 5' -60.3 NC_004688.1 + 28524 0.66 0.639164
Target:  5'- uGGCGcGGGCCuucaccGUCUCCUccguaucgaggugGAGGUugUGCa -3'
miRNA:   3'- -CCGC-CCCGG------CGGGGGG-------------CUUUAugACG- -5'
20573 5' -60.3 NC_004688.1 + 49111 0.67 0.619002
Target:  5'- aGCGuGGuGCuucuucuCGCaCCCCGGAAUugUGCa -3'
miRNA:   3'- cCGC-CC-CG-------GCGgGGGGCUUUAugACG- -5'
20573 5' -60.3 NC_004688.1 + 91801 0.67 0.609938
Target:  5'- cGGCGuGGGCguguucgGCCCCauggCGAucgGCUGCc -3'
miRNA:   3'- -CCGC-CCCGg------CGGGGg---GCUuuaUGACG- -5'
20573 5' -60.3 NC_004688.1 + 68820 0.67 0.599882
Target:  5'- uGGCGGGGaucgacuUGUCCCCC-AGGUGCUc- -3'
miRNA:   3'- -CCGCCCCg------GCGGGGGGcUUUAUGAcg -5'
20573 5' -60.3 NC_004688.1 + 18835 0.67 0.599882
Target:  5'- --gGGGGCCGCCCCaugccugaccaCGAGGgcggGCa -3'
miRNA:   3'- ccgCCCCGGCGGGGg----------GCUUUaugaCG- -5'
20573 5' -60.3 NC_004688.1 + 64810 0.67 0.593859
Target:  5'- cGGCGGGGCCGUUaugaggugugacaagUgCgGGAAguuCUGCg -3'
miRNA:   3'- -CCGCCCCGGCGG---------------GgGgCUUUau-GACG- -5'
20573 5' -60.3 NC_004688.1 + 109951 0.67 0.588848
Target:  5'- cGC-GGGCCGCCCaagCGAGGUgaucguuccugccGCUGCc -3'
miRNA:   3'- cCGcCCCGGCGGGgg-GCUUUA-------------UGACG- -5'
20573 5' -60.3 NC_004688.1 + 31990 0.67 0.569881
Target:  5'- -aCGGGGa-GCCCCaggaCGGAGUcCUGCa -3'
miRNA:   3'- ccGCCCCggCGGGGg---GCUUUAuGACG- -5'
20573 5' -60.3 NC_004688.1 + 57429 0.68 0.559957
Target:  5'- cGGCGacGCCguGCCgCCCCGggGUcCUGUu -3'
miRNA:   3'- -CCGCccCGG--CGG-GGGGCuuUAuGACG- -5'
20573 5' -60.3 NC_004688.1 + 37956 0.68 0.559957
Target:  5'- uGGCGcugaGGCCGCCccacaCCCCGAGGcGCaccgGCu -3'
miRNA:   3'- -CCGCc---CCGGCGG-----GGGGCUUUaUGa---CG- -5'
20573 5' -60.3 NC_004688.1 + 25351 0.68 0.511178
Target:  5'- aGUGGGaGCCGCCgCCCCacgccGAAUACUc- -3'
miRNA:   3'- cCGCCC-CGGCGG-GGGGc----UUUAUGAcg -5'
20573 5' -60.3 NC_004688.1 + 45402 0.68 0.511178
Target:  5'- aGGCcgugccacGGGUgGCCCUCCGGGAUGCg-- -3'
miRNA:   3'- -CCGc-------CCCGgCGGGGGGCUUUAUGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.