Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 16964 | 0.77 | 0.146982 |
Target: 5'- -uGcgCGCCAGgGCCAGCCCCcgGCGCa -3' miRNA: 3'- cuCuaGCGGUCgCGGUUGGGG--CGUGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 87784 | 0.76 | 0.184948 |
Target: 5'- cGAGA-CGCCgAGCGCCAgcgugccaaACCCUGCGCc -3' miRNA: 3'- -CUCUaGCGG-UCGCGGU---------UGGGGCGUGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 97309 | 0.73 | 0.293911 |
Target: 5'- -cGAUCGCUucGGCGCgGacuucgauGCCCCGCACc -3' miRNA: 3'- cuCUAGCGG--UCGCGgU--------UGGGGCGUGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 86662 | 0.72 | 0.315105 |
Target: 5'- gGGGAccgUUGCCGGUGCCcggGGCCCCGCcCg -3' miRNA: 3'- -CUCU---AGCGGUCGCGG---UUGGGGCGuGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 82402 | 0.71 | 0.36896 |
Target: 5'- -cGAUCGUCggauuGGCGCCGGgCCCGuCGCUg -3' miRNA: 3'- cuCUAGCGG-----UCGCGGUUgGGGC-GUGA- -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 110488 | 0.71 | 0.377151 |
Target: 5'- uGGggCGCUgaaagaAGuCGCCAcagGCCCCGCACUg -3' miRNA: 3'- cUCuaGCGG------UC-GCGGU---UGGGGCGUGA- -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 45169 | 0.7 | 0.393895 |
Target: 5'- cGGGGUCGcCCGGCGCCuagcuugcGGCCUcggcgaCGCGCUg -3' miRNA: 3'- -CUCUAGC-GGUCGCGG--------UUGGG------GCGUGA- -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 108692 | 0.7 | 0.402446 |
Target: 5'- aGAGAUgGCCaagugcgggguuGGCGCUGgcgaucuccGCCCCGCGCc -3' miRNA: 3'- -CUCUAgCGG------------UCGCGGU---------UGGGGCGUGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 52053 | 0.7 | 0.402446 |
Target: 5'- --cGUCGCCGGCGCCGgggccaucgccACCaCCGCGg- -3' miRNA: 3'- cucUAGCGGUCGCGGU-----------UGG-GGCGUga -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 68873 | 0.7 | 0.414614 |
Target: 5'- cGGGGUCGCCGGUccggacguagugguaGCCGgcgaggaucaGCCCCGC-CUu -3' miRNA: 3'- -CUCUAGCGGUCG---------------CGGU----------UGGGGCGuGA- -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 79345 | 0.7 | 0.419897 |
Target: 5'- aGGGGUCGUcauagCAGCgGCgCAACCuCCGCGCa -3' miRNA: 3'- -CUCUAGCG-----GUCG-CG-GUUGG-GGCGUGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 19562 | 0.7 | 0.428792 |
Target: 5'- cGGGAUgGacagaacaucaaCCGGCGCgAACUCCGCGCa -3' miRNA: 3'- -CUCUAgC------------GGUCGCGgUUGGGGCGUGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 34920 | 0.69 | 0.446911 |
Target: 5'- -uGGUgGCCGGCGCUucucGCCUgGCACg -3' miRNA: 3'- cuCUAgCGGUCGCGGu---UGGGgCGUGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 75111 | 0.69 | 0.456128 |
Target: 5'- cGAGAaCGCCugcAGCGUC-ACCCCGCuCg -3' miRNA: 3'- -CUCUaGCGG---UCGCGGuUGGGGCGuGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 33407 | 0.69 | 0.474864 |
Target: 5'- -cGGUCGaUCAcCGCCAGCCCCGUggGCUc -3' miRNA: 3'- cuCUAGC-GGUcGCGGUUGGGGCG--UGA- -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 66303 | 0.69 | 0.474864 |
Target: 5'- -cGAUCGUguacguccagugCGGCGCCuucgGGCCCUGCACc -3' miRNA: 3'- cuCUAGCG------------GUCGCGG----UUGGGGCGUGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 59181 | 0.69 | 0.493977 |
Target: 5'- -uGAUCGCgguuCAGCGCCGACaCCgGCGg- -3' miRNA: 3'- cuCUAGCG----GUCGCGGUUG-GGgCGUga -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 66546 | 0.68 | 0.500749 |
Target: 5'- aGAGGUCGCCGGCGUUGGCgaaaucuaggacgaUCCGC-CUc -3' miRNA: 3'- -CUCUAGCGGUCGCGGUUG--------------GGGCGuGA- -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 87981 | 0.68 | 0.503664 |
Target: 5'- cAGGUCGCCgccgcGGCGCCuACCCCuacCGCc -3' miRNA: 3'- cUCUAGCGG-----UCGCGGuUGGGGc--GUGa -5' |
|||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 31709 | 0.68 | 0.511473 |
Target: 5'- uGGcgCGCCugguuguagagcGCGCCGACCUCGuCGCUa -3' miRNA: 3'- cUCuaGCGGu-----------CGCGGUUGGGGC-GUGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home