miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20575 5' -59.6 NC_004688.1 + 3676 0.66 0.645286
Target:  5'- -uGAUCGCCGccGCGCgCGACUUCGC-Ca -3'
miRNA:   3'- cuCUAGCGGU--CGCG-GUUGGGGCGuGa -5'
20575 5' -59.6 NC_004688.1 + 4804 0.68 0.513433
Target:  5'- aGGGAaaUCGCCGGCGCUAugCa-GUACg -3'
miRNA:   3'- -CUCU--AGCGGUCGCGGUugGggCGUGa -5'
20575 5' -59.6 NC_004688.1 + 16964 0.77 0.146982
Target:  5'- -uGcgCGCCAGgGCCAGCCCCcgGCGCa -3'
miRNA:   3'- cuCuaGCGGUCgCGGUUGGGG--CGUGa -5'
20575 5' -59.6 NC_004688.1 + 19562 0.7 0.428792
Target:  5'- cGGGAUgGacagaacaucaaCCGGCGCgAACUCCGCGCa -3'
miRNA:   3'- -CUCUAgC------------GGUCGCGgUUGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 24134 0.66 0.665828
Target:  5'- -cGAucUCGUCAGuCGUCuGCCCCGgGCUu -3'
miRNA:   3'- cuCU--AGCGGUC-GCGGuUGGGGCgUGA- -5'
20575 5' -59.6 NC_004688.1 + 25813 0.66 0.634994
Target:  5'- aGGAaCGCCGGCGCCuuAGCCUUuaGCa -3'
miRNA:   3'- cUCUaGCGGUCGCGG--UUGGGGcgUGa -5'
20575 5' -59.6 NC_004688.1 + 28560 0.68 0.54318
Target:  5'- gGAGGUUGUgCAGCGCC-ACCCggucgaGCGCg -3'
miRNA:   3'- -CUCUAGCG-GUCGCGGuUGGGg-----CGUGa -5'
20575 5' -59.6 NC_004688.1 + 31709 0.68 0.511473
Target:  5'- uGGcgCGCCugguuguagagcGCGCCGACCUCGuCGCUa -3'
miRNA:   3'- cUCuaGCGGu-----------CGCGGUUGGGGC-GUGA- -5'
20575 5' -59.6 NC_004688.1 + 33407 0.69 0.474864
Target:  5'- -cGGUCGaUCAcCGCCAGCCCCGUggGCUc -3'
miRNA:   3'- cuCUAGC-GGUcGCGGUUGGGGCG--UGA- -5'
20575 5' -59.6 NC_004688.1 + 34673 0.66 0.634994
Target:  5'- -cGAUUGCCGuCGUCGGuCCCCGcCACa -3'
miRNA:   3'- cuCUAGCGGUcGCGGUU-GGGGC-GUGa -5'
20575 5' -59.6 NC_004688.1 + 34920 0.69 0.446911
Target:  5'- -uGGUgGCCGGCGCUucucGCCUgGCACg -3'
miRNA:   3'- cuCUAgCGGUCGCGGu---UGGGgCGUGa -5'
20575 5' -59.6 NC_004688.1 + 35249 0.66 0.655566
Target:  5'- --cGUCGgCAGCGCCGAacgacCCCUGCGa- -3'
miRNA:   3'- cucUAGCgGUCGCGGUU-----GGGGCGUga -5'
20575 5' -59.6 NC_004688.1 + 37268 0.68 0.54318
Target:  5'- uGGGAUCGaugCGGgGCCGGgCCCGCGg- -3'
miRNA:   3'- -CUCUAGCg--GUCgCGGUUgGGGCGUga -5'
20575 5' -59.6 NC_004688.1 + 37843 0.67 0.58366
Target:  5'- -cGAUgGUgGGCGCCGcacauGCCCCGCu-- -3'
miRNA:   3'- cuCUAgCGgUCGCGGU-----UGGGGCGuga -5'
20575 5' -59.6 NC_004688.1 + 40642 0.66 0.634994
Target:  5'- --uGUCGCCAGCGCU--CCgCCGgGCg -3'
miRNA:   3'- cucUAGCGGUCGCGGuuGG-GGCgUGa -5'
20575 5' -59.6 NC_004688.1 + 42691 0.66 0.676062
Target:  5'- gGGGAaucCGCCGGUGagGAUUCCGCGCUc -3'
miRNA:   3'- -CUCUa--GCGGUCGCggUUGGGGCGUGA- -5'
20575 5' -59.6 NC_004688.1 + 45169 0.7 0.393895
Target:  5'- cGGGGUCGcCCGGCGCCuagcuugcGGCCUcggcgaCGCGCUg -3'
miRNA:   3'- -CUCUAGC-GGUCGCGG--------UUGGG------GCGUGA- -5'
20575 5' -59.6 NC_004688.1 + 49997 0.68 0.533196
Target:  5'- -cGAUCGCCAcGCagauCCAGCCCUGCu-- -3'
miRNA:   3'- cuCUAGCGGU-CGc---GGUUGGGGCGuga -5'
20575 5' -59.6 NC_004688.1 + 52053 0.7 0.402446
Target:  5'- --cGUCGCCGGCGCCGgggccaucgccACCaCCGCGg- -3'
miRNA:   3'- cucUAGCGGUCGCGGU-----------UGG-GGCGUga -5'
20575 5' -59.6 NC_004688.1 + 54141 0.66 0.634994
Target:  5'- -cGAUCGaCUcgagGGCGCCGACCgcgaaUCGCGCa -3'
miRNA:   3'- cuCUAGC-GG----UCGCGGUUGG-----GGCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.