miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20575 5' -59.6 NC_004688.1 + 110488 0.71 0.377151
Target:  5'- uGGggCGCUgaaagaAGuCGCCAcagGCCCCGCACUg -3'
miRNA:   3'- cUCuaGCGG------UC-GCGGU---UGGGGCGUGA- -5'
20575 5' -59.6 NC_004688.1 + 108692 0.7 0.402446
Target:  5'- aGAGAUgGCCaagugcgggguuGGCGCUGgcgaucuccGCCCCGCGCc -3'
miRNA:   3'- -CUCUAgCGG------------UCGCGGU---------UGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 107130 0.66 0.645286
Target:  5'- -uGAUCGUUGugGCCuuCCCCGCGCUg -3'
miRNA:   3'- cuCUAGCGGUcgCGGuuGGGGCGUGA- -5'
20575 5' -59.6 NC_004688.1 + 104250 0.66 0.655566
Target:  5'- cGGGGUCcguGCCGGCGuaaCCGACCUC-CACg -3'
miRNA:   3'- -CUCUAG---CGGUCGC---GGUUGGGGcGUGa -5'
20575 5' -59.6 NC_004688.1 + 101388 0.67 0.58366
Target:  5'- gGAGAUcCGCCucGCGCuggaggaaguCAACCuuGCGCa -3'
miRNA:   3'- -CUCUA-GCGGu-CGCG----------GUUGGggCGUGa -5'
20575 5' -59.6 NC_004688.1 + 97309 0.73 0.293911
Target:  5'- -cGAUCGCUucGGCGCgGacuucgauGCCCCGCACc -3'
miRNA:   3'- cuCUAGCGG--UCGCGgU--------UGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 87981 0.68 0.503664
Target:  5'- cAGGUCGCCgccgcGGCGCCuACCCCuacCGCc -3'
miRNA:   3'- cUCUAGCGG-----UCGCGGuUGGGGc--GUGa -5'
20575 5' -59.6 NC_004688.1 + 87784 0.76 0.184948
Target:  5'- cGAGA-CGCCgAGCGCCAgcgugccaaACCCUGCGCc -3'
miRNA:   3'- -CUCUaGCGG-UCGCGGU---------UGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 86869 0.67 0.58366
Target:  5'- cGGGAUacugacggcCGCCAGCGCCccggagAugCCCGCc-- -3'
miRNA:   3'- -CUCUA---------GCGGUCGCGG------UugGGGCGuga -5'
20575 5' -59.6 NC_004688.1 + 86662 0.72 0.315105
Target:  5'- gGGGAccgUUGCCGGUGCCcggGGCCCCGCcCg -3'
miRNA:   3'- -CUCU---AGCGGUCGCGG---UUGGGGCGuGa -5'
20575 5' -59.6 NC_004688.1 + 85196 0.66 0.665828
Target:  5'- -cGAUCGCCuGCGCU--UCCUGCggGCUa -3'
miRNA:   3'- cuCUAGCGGuCGCGGuuGGGGCG--UGA- -5'
20575 5' -59.6 NC_004688.1 + 84645 0.66 0.624701
Target:  5'- cGAGGcCGCCaacAGCGCCuGCCgcagcaccugCCGCACc -3'
miRNA:   3'- -CUCUaGCGG---UCGCGGuUGG----------GGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 84493 0.67 0.593885
Target:  5'- cGGAcCgGCCAuCGCCGAgCCCGCGCc -3'
miRNA:   3'- cUCUaG-CGGUcGCGGUUgGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 82402 0.71 0.36896
Target:  5'- -cGAUCGUCggauuGGCGCCGGgCCCGuCGCUg -3'
miRNA:   3'- cuCUAGCGG-----UCGCGGUUgGGGC-GUGA- -5'
20575 5' -59.6 NC_004688.1 + 81505 0.67 0.604139
Target:  5'- uGGAaaUgGCCGG-GCCGaucgccACCCCGCGCg -3'
miRNA:   3'- cUCU--AgCGGUCgCGGU------UGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 79345 0.7 0.419897
Target:  5'- aGGGGUCGUcauagCAGCgGCgCAACCuCCGCGCa -3'
miRNA:   3'- -CUCUAGCG-----GUCG-CG-GUUGG-GGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 75350 0.66 0.654539
Target:  5'- cGAGAaguacacCGCCGGCGCCGccauaugugGCcgacggggcugagCCCGCGCg -3'
miRNA:   3'- -CUCUa------GCGGUCGCGGU---------UG-------------GGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 75111 0.69 0.456128
Target:  5'- cGAGAaCGCCugcAGCGUC-ACCCCGCuCg -3'
miRNA:   3'- -CUCUaGCGG---UCGCGGuUGGGGCGuGa -5'
20575 5' -59.6 NC_004688.1 + 71689 0.68 0.533196
Target:  5'- -uGGUCGgCGGCGCUggacccguuGGCCCCgGCACc -3'
miRNA:   3'- cuCUAGCgGUCGCGG---------UUGGGG-CGUGa -5'
20575 5' -59.6 NC_004688.1 + 70981 0.67 0.573471
Target:  5'- uAGGUCcaGUCGGCGCCuGCUCCGC-Cg -3'
miRNA:   3'- cUCUAG--CGGUCGCGGuUGGGGCGuGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.