miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20575 5' -59.6 NC_004688.1 + 42691 0.66 0.676062
Target:  5'- gGGGAaucCGCCGGUGagGAUUCCGCGCUc -3'
miRNA:   3'- -CUCUa--GCGGUCGCggUUGGGGCGUGA- -5'
20575 5' -59.6 NC_004688.1 + 34920 0.69 0.446911
Target:  5'- -uGGUgGCCGGCGCUucucGCCUgGCACg -3'
miRNA:   3'- cuCUAgCGGUCGCGGu---UGGGgCGUGa -5'
20575 5' -59.6 NC_004688.1 + 75111 0.69 0.456128
Target:  5'- cGAGAaCGCCugcAGCGUC-ACCCCGCuCg -3'
miRNA:   3'- -CUCUaGCGG---UCGCGGuUGGGGCGuGa -5'
20575 5' -59.6 NC_004688.1 + 33407 0.69 0.474864
Target:  5'- -cGGUCGaUCAcCGCCAGCCCCGUggGCUc -3'
miRNA:   3'- cuCUAGC-GGUcGCGGUUGGGGCG--UGA- -5'
20575 5' -59.6 NC_004688.1 + 66303 0.69 0.474864
Target:  5'- -cGAUCGUguacguccagugCGGCGCCuucgGGCCCUGCACc -3'
miRNA:   3'- cuCUAGCG------------GUCGCGG----UUGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 59181 0.69 0.493977
Target:  5'- -uGAUCGCgguuCAGCGCCGACaCCgGCGg- -3'
miRNA:   3'- cuCUAGCG----GUCGCGGUUG-GGgCGUga -5'
20575 5' -59.6 NC_004688.1 + 66546 0.68 0.500749
Target:  5'- aGAGGUCGCCGGCGUUGGCgaaaucuaggacgaUCCGC-CUc -3'
miRNA:   3'- -CUCUAGCGGUCGCGGUUG--------------GGGCGuGA- -5'
20575 5' -59.6 NC_004688.1 + 87981 0.68 0.503664
Target:  5'- cAGGUCGCCgccgcGGCGCCuACCCCuacCGCc -3'
miRNA:   3'- cUCUAGCGG-----UCGCGGuUGGGGc--GUGa -5'
20575 5' -59.6 NC_004688.1 + 31709 0.68 0.511473
Target:  5'- uGGcgCGCCugguuguagagcGCGCCGACCUCGuCGCUa -3'
miRNA:   3'- cUCuaGCGGu-----------CGCGGUUGGGGC-GUGA- -5'
20575 5' -59.6 NC_004688.1 + 19562 0.7 0.428792
Target:  5'- cGGGAUgGacagaacaucaaCCGGCGCgAACUCCGCGCa -3'
miRNA:   3'- -CUCUAgC------------GGUCGCGgUUGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 79345 0.7 0.419897
Target:  5'- aGGGGUCGUcauagCAGCgGCgCAACCuCCGCGCa -3'
miRNA:   3'- -CUCUAGCG-----GUCG-CG-GUUGG-GGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 68873 0.7 0.414614
Target:  5'- cGGGGUCGCCGGUccggacguagugguaGCCGgcgaggaucaGCCCCGC-CUu -3'
miRNA:   3'- -CUCUAGCGGUCG---------------CGGU----------UGGGGCGuGA- -5'
20575 5' -59.6 NC_004688.1 + 87784 0.76 0.184948
Target:  5'- cGAGA-CGCCgAGCGCCAgcgugccaaACCCUGCGCc -3'
miRNA:   3'- -CUCUaGCGG-UCGCGGU---------UGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 97309 0.73 0.293911
Target:  5'- -cGAUCGCUucGGCGCgGacuucgauGCCCCGCACc -3'
miRNA:   3'- cuCUAGCGG--UCGCGgU--------UGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 86662 0.72 0.315105
Target:  5'- gGGGAccgUUGCCGGUGCCcggGGCCCCGCcCg -3'
miRNA:   3'- -CUCU---AGCGGUCGCGG---UUGGGGCGuGa -5'
20575 5' -59.6 NC_004688.1 + 82402 0.71 0.36896
Target:  5'- -cGAUCGUCggauuGGCGCCGGgCCCGuCGCUg -3'
miRNA:   3'- cuCUAGCGG-----UCGCGGUUgGGGC-GUGA- -5'
20575 5' -59.6 NC_004688.1 + 110488 0.71 0.377151
Target:  5'- uGGggCGCUgaaagaAGuCGCCAcagGCCCCGCACUg -3'
miRNA:   3'- cUCuaGCGG------UC-GCGGU---UGGGGCGUGA- -5'
20575 5' -59.6 NC_004688.1 + 45169 0.7 0.393895
Target:  5'- cGGGGUCGcCCGGCGCCuagcuugcGGCCUcggcgaCGCGCUg -3'
miRNA:   3'- -CUCUAGC-GGUCGCGG--------UUGGG------GCGUGA- -5'
20575 5' -59.6 NC_004688.1 + 108692 0.7 0.402446
Target:  5'- aGAGAUgGCCaagugcgggguuGGCGCUGgcgaucuccGCCCCGCGCc -3'
miRNA:   3'- -CUCUAgCGG------------UCGCGGU---------UGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 52053 0.7 0.402446
Target:  5'- --cGUCGCCGGCGCCGgggccaucgccACCaCCGCGg- -3'
miRNA:   3'- cucUAGCGGUCGCGGU-----------UGG-GGCGUga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.