Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20596 | 5' | -54.9 | NC_004688.1 | + | 100796 | 0.77 | 0.322567 |
Target: 5'- -cGUGGCGAUCGCCuGACGcuCGGCCUUc -3' miRNA: 3'- ccCACCGCUAGCGG-UUGUu-GCUGGAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 82525 | 0.76 | 0.361732 |
Target: 5'- cGGUGGCGuuGUCGCCGA--ACGACCa- -3' miRNA: 3'- cCCACCGC--UAGCGGUUguUGCUGGag -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 108332 | 0.76 | 0.395366 |
Target: 5'- cGGUGGCGGUgGCCAucugGGCGcGCCUCu -3' miRNA: 3'- cCCACCGCUAgCGGUug--UUGC-UGGAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 94506 | 0.74 | 0.477959 |
Target: 5'- ---aGGUGAUCGCCGACAAcccCGACgUCa -3' miRNA: 3'- cccaCCGCUAGCGGUUGUU---GCUGgAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 40493 | 0.72 | 0.609767 |
Target: 5'- aGGUGGa---CGCCu-CGACGACCUCg -3' miRNA: 3'- cCCACCgcuaGCGGuuGUUGCUGGAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 69377 | 0.71 | 0.651623 |
Target: 5'- cGGUGGUGG-CGCCuucgGACuGGCGACCUg -3' miRNA: 3'- cCCACCGCUaGCGG----UUG-UUGCUGGAg -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 105754 | 0.71 | 0.662068 |
Target: 5'- cGGGUGGUGAagaccccacCGUCGACGaguucGCGACCgUCa -3' miRNA: 3'- -CCCACCGCUa--------GCGGUUGU-----UGCUGG-AG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 99989 | 0.71 | 0.672487 |
Target: 5'- cGGUGGCG--CGCaCGcCGACGACCUg -3' miRNA: 3'- cCCACCGCuaGCG-GUuGUUGCUGGAg -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 100208 | 0.7 | 0.693214 |
Target: 5'- uGGG-GGCGGUCaGCgCGGCGuuguccGCGGCCUg -3' miRNA: 3'- -CCCaCCGCUAG-CG-GUUGU------UGCUGGAg -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 99266 | 0.7 | 0.693214 |
Target: 5'- cGGG-GGCGAgCGCCucaAACuGCGGCCa- -3' miRNA: 3'- -CCCaCCGCUaGCGG---UUGuUGCUGGag -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 17627 | 0.7 | 0.693214 |
Target: 5'- cGGGUGauGCGccCGUgGGCAcCGACCUCg -3' miRNA: 3'- -CCCAC--CGCuaGCGgUUGUuGCUGGAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 103210 | 0.7 | 0.712708 |
Target: 5'- cGGGUGGaucggcaUGAUCGCCGuCGGCcgguucGCCUCg -3' miRNA: 3'- -CCCACC-------GCUAGCGGUuGUUGc-----UGGAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 14534 | 0.7 | 0.72388 |
Target: 5'- aGG-GGCG--CGCCAACcuccGCGGCCUCc -3' miRNA: 3'- cCCaCCGCuaGCGGUUGu---UGCUGGAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 103496 | 0.7 | 0.72388 |
Target: 5'- ---gGGCGAUCGCCGuGCAugGcccaguCCUCg -3' miRNA: 3'- cccaCCGCUAGCGGU-UGUugCu-----GGAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 86239 | 0.69 | 0.743927 |
Target: 5'- cGGUGGCGAgagaauccugcUCGagGAUGGCGACUUCc -3' miRNA: 3'- cCCACCGCU-----------AGCggUUGUUGCUGGAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 28221 | 0.69 | 0.743927 |
Target: 5'- ------gGAUCGCCuauuACGACGACCUCa -3' miRNA: 3'- cccaccgCUAGCGGu---UGUUGCUGGAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 27283 | 0.69 | 0.753802 |
Target: 5'- aGGGUGGUcacuuugcuuGGUCGCCGcccACGAgGACUa- -3' miRNA: 3'- -CCCACCG----------CUAGCGGU---UGUUgCUGGag -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 40938 | 0.69 | 0.763565 |
Target: 5'- aGGccGGCGAuacccUCGUCGACuuCGAUCUCa -3' miRNA: 3'- cCCa-CCGCU-----AGCGGUUGuuGCUGGAG- -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 64118 | 0.69 | 0.763565 |
Target: 5'- cGGcgGGCccuGAUCGCCGgcGCGAUGGCCa- -3' miRNA: 3'- cCCa-CCG---CUAGCGGU--UGUUGCUGGag -5' |
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20596 | 5' | -54.9 | NC_004688.1 | + | 1443 | 0.68 | 0.792082 |
Target: 5'- uGGGcGuCGAUCGCCGAaugGugGACCUg -3' miRNA: 3'- -CCCaCcGCUAGCGGUUg--UugCUGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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