miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20596 5' -54.9 NC_004688.1 + 1443 0.68 0.792082
Target:  5'- uGGGcGuCGAUCGCCGAaugGugGACCUg -3'
miRNA:   3'- -CCCaCcGCUAGCGGUUg--UugCUGGAg -5'
20596 5' -54.9 NC_004688.1 + 10191 0.68 0.810355
Target:  5'- cGG-GGCuGUCGCUGACGGCGGCaacaaUCg -3'
miRNA:   3'- cCCaCCGcUAGCGGUUGUUGCUGg----AG- -5'
20596 5' -54.9 NC_004688.1 + 14534 0.7 0.72388
Target:  5'- aGG-GGCG--CGCCAACcuccGCGGCCUCc -3'
miRNA:   3'- cCCaCCGCuaGCGGUUGu---UGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 17627 0.7 0.693214
Target:  5'- cGGGUGauGCGccCGUgGGCAcCGACCUCg -3'
miRNA:   3'- -CCCAC--CGCuaGCGgUUGUuGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 19015 0.68 0.819242
Target:  5'- aGGGUccGCGAUUGCCAGCc-CGGcuCCUCu -3'
miRNA:   3'- -CCCAc-CGCUAGCGGUUGuuGCU--GGAG- -5'
20596 5' -54.9 NC_004688.1 + 20777 0.68 0.810355
Target:  5'- aGGUGGCGcAUCGCCGcgucaaaauagACAcUGGCCc- -3'
miRNA:   3'- cCCACCGC-UAGCGGU-----------UGUuGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 27283 0.69 0.753802
Target:  5'- aGGGUGGUcacuuugcuuGGUCGCCGcccACGAgGACUa- -3'
miRNA:   3'- -CCCACCG----------CUAGCGGU---UGUUgCUGGag -5'
20596 5' -54.9 NC_004688.1 + 28221 0.69 0.743927
Target:  5'- ------gGAUCGCCuauuACGACGACCUCa -3'
miRNA:   3'- cccaccgCUAGCGGu---UGUUGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 39442 0.68 0.819242
Target:  5'- aGGGUugauGuGCGuAUUGUCGAUAACGACCg- -3'
miRNA:   3'- -CCCA----C-CGC-UAGCGGUUGUUGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 40493 0.72 0.609767
Target:  5'- aGGUGGa---CGCCu-CGACGACCUCg -3'
miRNA:   3'- cCCACCgcuaGCGGuuGUUGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 40938 0.69 0.763565
Target:  5'- aGGccGGCGAuacccUCGUCGACuuCGAUCUCa -3'
miRNA:   3'- cCCa-CCGCU-----AGCGGUUGuuGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 45170 0.66 0.890295
Target:  5'- gGGGUcGCccggCGCCuAGCuuGCGGCCUCg -3'
miRNA:   3'- -CCCAcCGcua-GCGG-UUGu-UGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 46092 0.66 0.909909
Target:  5'- uGGGU--UGAUCGCCAGau-CGACCg- -3'
miRNA:   3'- -CCCAccGCUAGCGGUUguuGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 47865 0.68 0.801299
Target:  5'- aGGGcaccGGCGAU-GCCGAUGugGAaguCCUCg -3'
miRNA:   3'- -CCCa---CCGCUAgCGGUUGUugCU---GGAG- -5'
20596 5' -54.9 NC_004688.1 + 50059 0.67 0.868548
Target:  5'- ---cGGCGGUCGCCAAUggUccaGGCCcCg -3'
miRNA:   3'- cccaCCGCUAGCGGUUGuuG---CUGGaG- -5'
20596 5' -54.9 NC_004688.1 + 52129 0.66 0.909909
Target:  5'- uGGGUGGCcaauccgauGAUCGUgG---GCGugCUCg -3'
miRNA:   3'- -CCCACCG---------CUAGCGgUuguUGCugGAG- -5'
20596 5' -54.9 NC_004688.1 + 53892 0.67 0.837316
Target:  5'- cGGG-GGCGGgcaggguucguuaaGCCAGCucaugAGCGACCUUc -3'
miRNA:   3'- -CCCaCCGCUag------------CGGUUG-----UUGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 56562 0.66 0.897076
Target:  5'- --uUGGUGAUgUGCCcGCGGCGGCCg- -3'
miRNA:   3'- cccACCGCUA-GCGGuUGUUGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 61706 0.66 0.903614
Target:  5'- cGGGUGGagugaugaGGUgCGCCGcGCcGCGGCCg- -3'
miRNA:   3'- -CCCACCg-------CUA-GCGGU-UGuUGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 64118 0.69 0.763565
Target:  5'- cGGcgGGCccuGAUCGCCGgcGCGAUGGCCa- -3'
miRNA:   3'- cCCa-CCG---CUAGCGGU--UGUUGCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.