miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20596 5' -54.9 NC_004688.1 + 82469 0.66 0.909909
Target:  5'- cGGGaagccgGGCuGGUCGCCGAaguUggUGACCg- -3'
miRNA:   3'- -CCCa-----CCG-CUAGCGGUU---GuuGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 14534 0.7 0.72388
Target:  5'- aGG-GGCG--CGCCAACcuccGCGGCCUCc -3'
miRNA:   3'- cCCaCCGCuaGCGGUUGu---UGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 103496 0.7 0.72388
Target:  5'- ---gGGCGAUCGCCGuGCAugGcccaguCCUCg -3'
miRNA:   3'- cccaCCGCUAGCGGU-UGUugCu-----GGAG- -5'
20596 5' -54.9 NC_004688.1 + 28221 0.69 0.743927
Target:  5'- ------gGAUCGCCuauuACGACGACCUCa -3'
miRNA:   3'- cccaccgCUAGCGGu---UGUUGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 86239 0.69 0.743927
Target:  5'- cGGUGGCGAgagaauccugcUCGagGAUGGCGACUUCc -3'
miRNA:   3'- cCCACCGCU-----------AGCggUUGUUGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 27283 0.69 0.753802
Target:  5'- aGGGUGGUcacuuugcuuGGUCGCCGcccACGAgGACUa- -3'
miRNA:   3'- -CCCACCG----------CUAGCGGU---UGUUgCUGGag -5'
20596 5' -54.9 NC_004688.1 + 40938 0.69 0.763565
Target:  5'- aGGccGGCGAuacccUCGUCGACuuCGAUCUCa -3'
miRNA:   3'- cCCa-CCGCU-----AGCGGUUGuuGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 64118 0.69 0.763565
Target:  5'- cGGcgGGCccuGAUCGCCGgcGCGAUGGCCa- -3'
miRNA:   3'- cCCa-CCG---CUAGCGGU--UGUUGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 1443 0.68 0.792082
Target:  5'- uGGGcGuCGAUCGCCGAaugGugGACCUg -3'
miRNA:   3'- -CCCaCcGCUAGCGGUUg--UugCUGGAg -5'
20596 5' -54.9 NC_004688.1 + 103210 0.7 0.712708
Target:  5'- cGGGUGGaucggcaUGAUCGCCGuCGGCcgguucGCCUCg -3'
miRNA:   3'- -CCCACC-------GCUAGCGGUuGUUGc-----UGGAG- -5'
20596 5' -54.9 NC_004688.1 + 100208 0.7 0.693214
Target:  5'- uGGG-GGCGGUCaGCgCGGCGuuguccGCGGCCUg -3'
miRNA:   3'- -CCCaCCGCUAG-CG-GUUGU------UGCUGGAg -5'
20596 5' -54.9 NC_004688.1 + 99266 0.7 0.693214
Target:  5'- cGGG-GGCGAgCGCCucaAACuGCGGCCa- -3'
miRNA:   3'- -CCCaCCGCUaGCGG---UUGuUGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 82525 0.76 0.361732
Target:  5'- cGGUGGCGuuGUCGCCGA--ACGACCa- -3'
miRNA:   3'- cCCACCGC--UAGCGGUUguUGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 108332 0.76 0.395366
Target:  5'- cGGUGGCGGUgGCCAucugGGCGcGCCUCu -3'
miRNA:   3'- cCCACCGCUAgCGGUug--UUGC-UGGAG- -5'
20596 5' -54.9 NC_004688.1 + 94506 0.74 0.477959
Target:  5'- ---aGGUGAUCGCCGACAAcccCGACgUCa -3'
miRNA:   3'- cccaCCGCUAGCGGUUGUU---GCUGgAG- -5'
20596 5' -54.9 NC_004688.1 + 40493 0.72 0.609767
Target:  5'- aGGUGGa---CGCCu-CGACGACCUCg -3'
miRNA:   3'- cCCACCgcuaGCGGuuGUUGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 69377 0.71 0.651623
Target:  5'- cGGUGGUGG-CGCCuucgGACuGGCGACCUg -3'
miRNA:   3'- cCCACCGCUaGCGG----UUG-UUGCUGGAg -5'
20596 5' -54.9 NC_004688.1 + 105754 0.71 0.662068
Target:  5'- cGGGUGGUGAagaccccacCGUCGACGaguucGCGACCgUCa -3'
miRNA:   3'- -CCCACCGCUa--------GCGGUUGU-----UGCUGG-AG- -5'
20596 5' -54.9 NC_004688.1 + 99989 0.71 0.672487
Target:  5'- cGGUGGCG--CGCaCGcCGACGACCUg -3'
miRNA:   3'- cCCACCGCuaGCG-GUuGUUGCUGGAg -5'
20596 5' -54.9 NC_004688.1 + 17627 0.7 0.693214
Target:  5'- cGGGUGauGCGccCGUgGGCAcCGACCUCg -3'
miRNA:   3'- -CCCAC--CGCuaGCGgUUGUuGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.