miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
206 5' -52.1 AC_000007.1 + 33188 0.66 0.76823
Target:  5'- aUCAGGAuaGGGcggugguGCUGCAGCagcgcgcgaauaaacUGCUGCCg -3'
miRNA:   3'- gGGUUUU--UCUu------CGACGUCG---------------ACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 28880 0.69 0.545765
Target:  5'- aCCUuuuuGGcAGcGCUGCAGaCUGCCGCa -3'
miRNA:   3'- -GGGuuuuUC-UU-CGACGUC-GACGGCGg -5'
206 5' -52.1 AC_000007.1 + 28811 0.7 0.500888
Target:  5'- gCCCuuGcGGcAGuCUGCAGC-GCUGCCa -3'
miRNA:   3'- -GGGuuUuUCuUC-GACGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 27229 0.66 0.741957
Target:  5'- gCCaCAAAuGGGAcUUGCGGCUggaGCUGCCc -3'
miRNA:   3'- -GG-GUUUuUCUUcGACGUCGA---CGGCGG- -5'
206 5' -52.1 AC_000007.1 + 26904 0.69 0.557195
Target:  5'- gCCAGAcgc-AGCgcuccuccuccUGCuGCUGCCGCCg -3'
miRNA:   3'- gGGUUUuucuUCG-----------ACGuCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 26844 0.67 0.685126
Target:  5'- -gCAGGAGGAGgagcGCUGCGuCUGgCGCCc -3'
miRNA:   3'- ggGUUUUUCUU----CGACGUcGACgGCGG- -5'
206 5' -52.1 AC_000007.1 + 26808 0.72 0.40669
Target:  5'- aCCGcugcuGuuGCUGCcGCUGCCGCUg -3'
miRNA:   3'- gGGUuuuu-CuuCGACGuCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 26516 0.71 0.479062
Target:  5'- aCCAGGGccGGuAAGUcuaaGCAGCcGCCGCCg -3'
miRNA:   3'- gGGUUUU--UC-UUCGa---CGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 26498 0.67 0.692054
Target:  5'- gCCUGAGGagcGGAGGUUGUAGCgaugcugggaacgGuuGCCa -3'
miRNA:   3'- -GGGUUUU---UCUUCGACGUCGa------------CggCGG- -5'
206 5' -52.1 AC_000007.1 + 26248 0.66 0.730786
Target:  5'- uCCUggGAAGcaaGGGCccGCGGCUGCUGa- -3'
miRNA:   3'- -GGGuuUUUC---UUCGa-CGUCGACGGCgg -5'
206 5' -52.1 AC_000007.1 + 26218 1.16 0.00036
Target:  5'- aCCCAAAAAGAAGCUGCAGCUGCCGCCg -3'
miRNA:   3'- -GGGUUUUUCUUCGACGUCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 25410 0.78 0.177072
Target:  5'- aCCUA--AAGGAGCUGCAGaaGCUGCUa -3'
miRNA:   3'- -GGGUuuUUCUUCGACGUCgaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 24986 0.69 0.553758
Target:  5'- aCCGAGGAGGgccuacccgcaguuGGCgaugaGCAGCUGgCGCg -3'
miRNA:   3'- gGGUUUUUCU--------------UCGa----CGUCGACgGCGg -5'
206 5' -52.1 AC_000007.1 + 23966 0.68 0.638545
Target:  5'- cCCCAAAAAGcGGCUGaGGC-GgCGUCu -3'
miRNA:   3'- -GGGUUUUUCuUCGACgUCGaCgGCGG- -5'
206 5' -52.1 AC_000007.1 + 23463 0.69 0.557195
Target:  5'- aCCAAGuGGAAGCUcUGGCgGCCGUa -3'
miRNA:   3'- gGGUUUuUCUUCGAcGUCGaCGGCGg -5'
206 5' -52.1 AC_000007.1 + 21712 0.75 0.267254
Target:  5'- gCCAcaacauAAAAGAAGCaagcaacaucaacaaCAGCUGCCGCCa -3'
miRNA:   3'- gGGU------UUUUCUUCGac-------------GUCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 19230 0.67 0.708124
Target:  5'- aCCGAAGauAGcGGCcggGCAGUUGCCGa- -3'
miRNA:   3'- gGGUUUU--UCuUCGa--CGUCGACGGCgg -5'
206 5' -52.1 AC_000007.1 + 18779 0.77 0.210087
Target:  5'- gCCA--GAGGAGCUGCuGa-GCCGCCg -3'
miRNA:   3'- gGGUuuUUCUUCGACGuCgaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 17725 0.66 0.774663
Target:  5'- aCCGGGAaacGGAGGCgGCAGgUGaggGCCa -3'
miRNA:   3'- gGGUUUU---UCUUCGaCGUCgACgg-CGG- -5'
206 5' -52.1 AC_000007.1 + 17351 0.73 0.332909
Target:  5'- cUCCGuAGAGGuuuuggacgcGGCcGCAGCgGCCGCCu -3'
miRNA:   3'- -GGGUuUUUCU----------UCGaCGUCGaCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.