miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
206 5' -52.1 AC_000007.1 + 3656 0.66 0.774663
Target:  5'- uUCCAucAAAcGAguuggcgcucauGGCgGCGGCUGCUGCa -3'
miRNA:   3'- -GGGU--UUUuCU------------UCGaCGUCGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 12675 0.68 0.615166
Target:  5'- gUCCAGGuu--GGuCUGCAcGUUGCCGCUg -3'
miRNA:   3'- -GGGUUUuucuUC-GACGU-CGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 23463 0.69 0.557195
Target:  5'- aCCAAGuGGAAGCUcUGGCgGCCGUa -3'
miRNA:   3'- gGGUUUuUCUUCGAcGUCGaCGGCGg -5'
206 5' -52.1 AC_000007.1 + 12507 0.8 0.136189
Target:  5'- uUCCAGAAuugcGGAgagccgguuGGcCUGCGGCUGCUGCCg -3'
miRNA:   3'- -GGGUUUU----UCU---------UC-GACGUCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 11172 0.66 0.738618
Target:  5'- cCCCuccugacgcgguagGAGAAGggGagggugccCUGCAuGuCUGCCGCUg -3'
miRNA:   3'- -GGG--------------UUUUUCuuC--------GACGU-C-GACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 917 0.66 0.730786
Target:  5'- aCCCA---AGGcucucugcuccGGCUGCucgGGCUGCCGg- -3'
miRNA:   3'- -GGGUuuuUCU-----------UCGACG---UCGACGGCgg -5'
206 5' -52.1 AC_000007.1 + 14825 0.66 0.719504
Target:  5'- cCCCAGucuGAAGUUGCGGgUGUCa-- -3'
miRNA:   3'- -GGGUUuuuCUUCGACGUCgACGGcgg -5'
206 5' -52.1 AC_000007.1 + 5535 0.67 0.696661
Target:  5'- cUCCAAGGGcAAGCUGCGcGCcaaggGCCacGCCg -3'
miRNA:   3'- -GGGUUUUUcUUCGACGU-CGa----CGG--CGG- -5'
206 5' -52.1 AC_000007.1 + 11109 0.67 0.673534
Target:  5'- gCCGcugcugagGAGGGggGC-GCAuCUGCCGCa -3'
miRNA:   3'- gGGU--------UUUUCuuCGaCGUcGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 15162 0.68 0.624515
Target:  5'- aCCGGcugcauuGCcGCGGCUGCCGCg -3'
miRNA:   3'- gGGUUuuucuu-CGaCGUCGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 23966 0.68 0.638545
Target:  5'- cCCCAAAAAGcGGCUGaGGC-GgCGUCu -3'
miRNA:   3'- -GGGUUUUUCuUCGACgUCGaCgGCGG- -5'
206 5' -52.1 AC_000007.1 + 7264 0.67 0.673534
Target:  5'- aCCCGuagaAAAGGGAuGCUGC-GCcuaccagGCCGUCa -3'
miRNA:   3'- -GGGU----UUUUCUU-CGACGuCGa------CGGCGG- -5'
206 5' -52.1 AC_000007.1 + 9935 0.66 0.774663
Target:  5'- gUCAAAAcGAAGcCUGgGGCaugGCCGaCCg -3'
miRNA:   3'- gGGUUUUuCUUC-GACgUCGa--CGGC-GG- -5'
206 5' -52.1 AC_000007.1 + 12752 0.68 0.638545
Target:  5'- aCCAugGAGcccAGGUUGCccuGCUGCUGCg -3'
miRNA:   3'- gGGUuuUUC---UUCGACGu--CGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 17725 0.66 0.774663
Target:  5'- aCCGGGAaacGGAGGCgGCAGgUGaggGCCa -3'
miRNA:   3'- gGGUUUU---UCUUCGaCGUCgACgg-CGG- -5'
206 5' -52.1 AC_000007.1 + 26498 0.67 0.692054
Target:  5'- gCCUGAGGagcGGAGGUUGUAGCgaugcugggaacgGuuGCCa -3'
miRNA:   3'- -GGGUUUU---UCUUCGACGUCGa------------CggCGG- -5'
206 5' -52.1 AC_000007.1 + 14032 0.68 0.638545
Target:  5'- uCCCAAAuccAGGAcGCUGCuGUcGuCUGCCg -3'
miRNA:   3'- -GGGUUU---UUCUuCGACGuCGaC-GGCGG- -5'
206 5' -52.1 AC_000007.1 + 15278 0.69 0.591853
Target:  5'- cCUCGGGuugcgcagcGGggGCgGCAGCuucUGCCGCUg -3'
miRNA:   3'- -GGGUUUu--------UCuuCGaCGUCG---ACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 6699 0.66 0.763909
Target:  5'- aCCCAuac--GAGC-GCGcGCuUGCCGCCc -3'
miRNA:   3'- -GGGUuuuucUUCGaCGU-CG-ACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 26248 0.66 0.730786
Target:  5'- uCCUggGAAGcaaGGGCccGCGGCUGCUGa- -3'
miRNA:   3'- -GGGuuUUUC---UUCGa-CGUCGACGGCgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.