miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20608 5' -59.2 NC_004688.1 + 50907 0.66 0.750019
Target:  5'- cGCCGGcgaccaagcgCCCGGUUGgcuCCGuCUUCCcUCg -3'
miRNA:   3'- -CGGCCaa--------GGGCCAAC---GGC-GAAGGcGG- -5'
20608 5' -59.2 NC_004688.1 + 84690 0.66 0.750019
Target:  5'- uGCCGGUgCCgGGcUGCUGCcUuuGUg -3'
miRNA:   3'- -CGGCCAaGGgCCaACGGCGaAggCGg -5'
20608 5' -59.2 NC_004688.1 + 61962 0.66 0.740438
Target:  5'- gGUgGGUUCgCGGUcccugUGCCGCggggcUCCGgUg -3'
miRNA:   3'- -CGgCCAAGgGCCA-----ACGGCGa----AGGCgG- -5'
20608 5' -59.2 NC_004688.1 + 31787 0.66 0.740438
Target:  5'- -aCGGUgCCCGccccGaCCGCcUCCGCCa -3'
miRNA:   3'- cgGCCAaGGGCcaa-C-GGCGaAGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 57372 0.66 0.737546
Target:  5'- gGCUGGa-CCCGGggGuuGCgagguuggugggggUUCCGUCg -3'
miRNA:   3'- -CGGCCaaGGGCCaaCggCG--------------AAGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 92431 0.66 0.734645
Target:  5'- aCCGGcaccucggugcggauUUCCCuggGGUUGCCGUagUCGUCg -3'
miRNA:   3'- cGGCC---------------AAGGG---CCAACGGCGaaGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 91203 0.66 0.730766
Target:  5'- cCCGGgcCCCGG-UGCCGCagauggCgGCa -3'
miRNA:   3'- cGGCCaaGGGCCaACGGCGaa----GgCGg -5'
20608 5' -59.2 NC_004688.1 + 89353 0.66 0.721009
Target:  5'- cGCCcuugauGGUgcggCCCGGgaguucggUGCCGuCUUCCaGCg -3'
miRNA:   3'- -CGG------CCAa---GGGCCa-------ACGGC-GAAGG-CGg -5'
20608 5' -59.2 NC_004688.1 + 96249 0.66 0.701282
Target:  5'- uGCCc--UCCCGG-UGCUcagGCUuaacUCCGCCg -3'
miRNA:   3'- -CGGccaAGGGCCaACGG---CGA----AGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 29680 0.66 0.701282
Target:  5'- cGCCG--UCCCGGacuuuugaaUGCCGC-UCUGCg -3'
miRNA:   3'- -CGGCcaAGGGCCa--------ACGGCGaAGGCGg -5'
20608 5' -59.2 NC_004688.1 + 48404 0.67 0.691329
Target:  5'- aGCUGGcaUUCcgCCGGUUGaaGCUUuuaaguuuugcCCGCCg -3'
miRNA:   3'- -CGGCC--AAG--GGCCAACggCGAA-----------GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 31331 0.67 0.681327
Target:  5'- aGCUGGcgCUCGGccGCCGcCUUuuGCg -3'
miRNA:   3'- -CGGCCaaGGGCCaaCGGC-GAAggCGg -5'
20608 5' -59.2 NC_004688.1 + 71619 0.67 0.681327
Target:  5'- aCCGGUgguuguggaCCCGcuGUUGuuGCcaCCGCCa -3'
miRNA:   3'- cGGCCAa--------GGGC--CAACggCGaaGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 58860 0.67 0.678319
Target:  5'- aGCCGGUgaacauaauugaggCUGGUUcaucGCCGCUgcccuucucgcugCCGCCg -3'
miRNA:   3'- -CGGCCAag------------GGCCAA----CGGCGAa------------GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 44484 0.67 0.661214
Target:  5'- cGCCaGGaugucUUCCUGGggaacGCCGUgcuuggCCGCCa -3'
miRNA:   3'- -CGG-CC-----AAGGGCCaa---CGGCGaa----GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 22974 0.67 0.64101
Target:  5'- -gCGGUUUUCGGccacGUCGCgcugCCGCCg -3'
miRNA:   3'- cgGCCAAGGGCCaa--CGGCGaa--GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 36489 0.68 0.630893
Target:  5'- cGCCGGcuccacaCCCGGgagaUGCCGaugaugCCGUCg -3'
miRNA:   3'- -CGGCCaa-----GGGCCa---ACGGCgaa---GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 70870 0.68 0.630893
Target:  5'- -gUGGUUUCgGuGUUGUgGCgUCCGCCg -3'
miRNA:   3'- cgGCCAAGGgC-CAACGgCGaAGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 45166 0.68 0.630893
Target:  5'- cGCCGGggucgCCCGGc-GCCuaGCUUgCgGCCu -3'
miRNA:   3'- -CGGCCaa---GGGCCaaCGG--CGAA-GgCGG- -5'
20608 5' -59.2 NC_004688.1 + 20658 0.68 0.630893
Target:  5'- cGUCGG-UCCa-GUUGCCGCggaaUUCGCUg -3'
miRNA:   3'- -CGGCCaAGGgcCAACGGCGa---AGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.