miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20626 5' -58.8 NC_004688.1 + 68863 0.8 0.141275
Target:  5'- gCCugGGCGGCGGGgUCGCCggucCGGAcguagugguaGCCg -3'
miRNA:   3'- -GGugCCGCUGCCCaAGCGG----GCCU----------UGG- -5'
20626 5' -58.8 NC_004688.1 + 56573 0.79 0.159326
Target:  5'- cCCGCGGCGGcCGGGgaacaccagggCGUCCGGAuugGCCg -3'
miRNA:   3'- -GGUGCCGCU-GCCCaa---------GCGGGCCU---UGG- -5'
20626 5' -58.8 NC_004688.1 + 60968 0.79 0.176801
Target:  5'- gCACGGgGccuauaGCGGGUUUGCCCGGuuCCg -3'
miRNA:   3'- gGUGCCgC------UGCCCAAGCGGGCCuuGG- -5'
20626 5' -58.8 NC_004688.1 + 52477 0.78 0.195008
Target:  5'- aCCGCGGUguggcuGGCGGGcUUCGCCCuGGcGGCCg -3'
miRNA:   3'- -GGUGCCG------CUGCCC-AAGCGGG-CC-UUGG- -5'
20626 5' -58.8 NC_004688.1 + 79938 0.73 0.387744
Target:  5'- -gACGGCaGGcCGGGccCGCCCGGAucgACCg -3'
miRNA:   3'- ggUGCCG-CU-GCCCaaGCGGGCCU---UGG- -5'
20626 5' -58.8 NC_004688.1 + 101026 0.73 0.401797
Target:  5'- cCCGCGGCuGccguagcuacguccGCGGGccCGCCCGGAugUc -3'
miRNA:   3'- -GGUGCCG-C--------------UGCCCaaGCGGGCCUugG- -5'
20626 5' -58.8 NC_004688.1 + 60889 0.72 0.456585
Target:  5'- uCCACGGCuGCGGGUcggcgaaaUCaaGCCCuGGuACCg -3'
miRNA:   3'- -GGUGCCGcUGCCCA--------AG--CGGG-CCuUGG- -5'
20626 5' -58.8 NC_004688.1 + 93941 0.71 0.474803
Target:  5'- aCACGGCGcCGGGgaaGCCCcaguaGGGCCc -3'
miRNA:   3'- gGUGCCGCuGCCCaagCGGGc----CUUGG- -5'
20626 5' -58.8 NC_004688.1 + 109905 0.71 0.484048
Target:  5'- gUCACGGCGACGGGcUCaccauCCgCGGugacGACCu -3'
miRNA:   3'- -GGUGCCGCUGCCCaAGc----GG-GCC----UUGG- -5'
20626 5' -58.8 NC_004688.1 + 86622 0.71 0.50279
Target:  5'- cCCGCGuucggguuccaGCGACGGcGUccgucgCGCCCgugGGGACCg -3'
miRNA:   3'- -GGUGC-----------CGCUGCC-CAa-----GCGGG---CCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 45156 0.71 0.50279
Target:  5'- cUCGgGGCaacgcCGGGgUCGCCCGGcGCCu -3'
miRNA:   3'- -GGUgCCGcu---GCCCaAGCGGGCCuUGG- -5'
20626 5' -58.8 NC_004688.1 + 57206 0.7 0.52184
Target:  5'- uUCugGGCcuGCGGGUcCGCCCaGGcuCCg -3'
miRNA:   3'- -GGugCCGc-UGCCCAaGCGGG-CCuuGG- -5'
20626 5' -58.8 NC_004688.1 + 102953 0.7 0.531471
Target:  5'- uCCGCGucgcuCGAcaagauuccgcuCGGGUUCGCCgagucgCGGAACCa -3'
miRNA:   3'- -GGUGCc----GCU------------GCCCAAGCGG------GCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 26398 0.7 0.541165
Target:  5'- aCACGGCGuCGuaGGUguaauccggCGUCgGGAGCCa -3'
miRNA:   3'- gGUGCCGCuGC--CCAa--------GCGGgCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 92646 0.7 0.560723
Target:  5'- uCCAggcCGGUGAUGGGgcccgUgGCgCCGGuGCCg -3'
miRNA:   3'- -GGU---GCCGCUGCCCa----AgCG-GGCCuUGG- -5'
20626 5' -58.8 NC_004688.1 + 74784 0.69 0.587418
Target:  5'- gCCACGGCGGCcaugccgaucucggGGGUgagggugaCGCCaaacuccuccuUGGGGCCa -3'
miRNA:   3'- -GGUGCCGCUG--------------CCCAa-------GCGG-----------GCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 93889 0.69 0.610341
Target:  5'- gCCGCGGUG-CGGGcgaugacgUCgGCCuguuCGGGGCCg -3'
miRNA:   3'- -GGUGCCGCuGCCCa-------AG-CGG----GCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 52921 0.69 0.630343
Target:  5'- aCCGCGGCc-CGGGggCaCCuCGGGGCUg -3'
miRNA:   3'- -GGUGCCGcuGCCCaaGcGG-GCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 101135 0.69 0.630343
Target:  5'- aCUuCGGCGACGGucaGUUCgucgGCCuCGGggUCg -3'
miRNA:   3'- -GGuGCCGCUGCC---CAAG----CGG-GCCuuGG- -5'
20626 5' -58.8 NC_004688.1 + 76290 0.68 0.64035
Target:  5'- aUCGCGGUaccguuCGGGa-UGCCCGGAACg -3'
miRNA:   3'- -GGUGCCGcu----GCCCaaGCGGGCCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.