miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20626 5' -58.8 NC_004688.1 + 181 0.67 0.719518
Target:  5'- gCAUGGCGAUuGcGacCGCCUGaGAGCCa -3'
miRNA:   3'- gGUGCCGCUGcC-CaaGCGGGC-CUUGG- -5'
20626 5' -58.8 NC_004688.1 + 9617 0.66 0.79409
Target:  5'- gCUGCGGUGGCcggaugaGGUUCGCgagCCGGAuuuuCCc -3'
miRNA:   3'- -GGUGCCGCUGc------CCAAGCG---GGCCUu---GG- -5'
20626 5' -58.8 NC_004688.1 + 17621 0.67 0.738763
Target:  5'- --uUGGUG-CGGGUgaugCGCCCGuGGGCa -3'
miRNA:   3'- gguGCCGCuGCCCAa---GCGGGC-CUUGg -5'
20626 5' -58.8 NC_004688.1 + 17915 0.66 0.790538
Target:  5'- gCCGCGGCGAuucugcuucggaguCGGGggCGUuacccccagcuccUUGGGAUCa -3'
miRNA:   3'- -GGUGCCGCU--------------GCCCaaGCG-------------GGCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 26398 0.7 0.541165
Target:  5'- aCACGGCGuCGuaGGUguaauccggCGUCgGGAGCCa -3'
miRNA:   3'- gGUGCCGCuGC--CCAa--------GCGGgCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 45156 0.71 0.50279
Target:  5'- cUCGgGGCaacgcCGGGgUCGCCCGGcGCCu -3'
miRNA:   3'- -GGUgCCGcu---GCCCaAGCGGGCCuUGG- -5'
20626 5' -58.8 NC_004688.1 + 46222 0.66 0.776117
Target:  5'- gCCA--GUGAaGGGUgUCGCCCGGcuCCa -3'
miRNA:   3'- -GGUgcCGCUgCCCA-AGCGGGCCuuGG- -5'
20626 5' -58.8 NC_004688.1 + 49036 0.66 0.757652
Target:  5'- gCUGCGGCGguaguugccGCGGGgcUCG-UCGGAGCUg -3'
miRNA:   3'- -GGUGCCGC---------UGCCCa-AGCgGGCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 52477 0.78 0.195008
Target:  5'- aCCGCGGUguggcuGGCGGGcUUCGCCCuGGcGGCCg -3'
miRNA:   3'- -GGUGCCG------CUGCCC-AAGCGGG-CC-UUGG- -5'
20626 5' -58.8 NC_004688.1 + 52921 0.69 0.630343
Target:  5'- aCCGCGGCc-CGGGggCaCCuCGGGGCUg -3'
miRNA:   3'- -GGUGCCGcuGCCCaaGcGG-GCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 56573 0.79 0.159326
Target:  5'- cCCGCGGCGGcCGGGgaacaccagggCGUCCGGAuugGCCg -3'
miRNA:   3'- -GGUGCCGCU-GCCCaa---------GCGGGCCU---UGG- -5'
20626 5' -58.8 NC_004688.1 + 57206 0.7 0.52184
Target:  5'- uUCugGGCcuGCGGGUcCGCCCaGGcuCCg -3'
miRNA:   3'- -GGugCCGc-UGCCCAaGCGGG-CCuuGG- -5'
20626 5' -58.8 NC_004688.1 + 59783 0.66 0.776117
Target:  5'- cCCGCccGCGAgGGGUggauucuccCGCCUGGAuggaucggugACCg -3'
miRNA:   3'- -GGUGc-CGCUgCCCAa--------GCGGGCCU----------UGG- -5'
20626 5' -58.8 NC_004688.1 + 60889 0.72 0.456585
Target:  5'- uCCACGGCuGCGGGUcggcgaaaUCaaGCCCuGGuACCg -3'
miRNA:   3'- -GGUGCCGcUGCCCA--------AG--CGGG-CCuUGG- -5'
20626 5' -58.8 NC_004688.1 + 60968 0.79 0.176801
Target:  5'- gCACGGgGccuauaGCGGGUUUGCCCGGuuCCg -3'
miRNA:   3'- gGUGCCgC------UGCCCAAGCGGGCCuuGG- -5'
20626 5' -58.8 NC_004688.1 + 62620 0.68 0.670303
Target:  5'- gCGCGGCGGCGac--CGCUCGGuccACCu -3'
miRNA:   3'- gGUGCCGCUGCccaaGCGGGCCu--UGG- -5'
20626 5' -58.8 NC_004688.1 + 64479 0.66 0.79409
Target:  5'- -aGCGGCaguGCuacGGUUCGgCCGGAugCa -3'
miRNA:   3'- ggUGCCGc--UGc--CCAAGCgGGCCUugG- -5'
20626 5' -58.8 NC_004688.1 + 64776 0.66 0.766942
Target:  5'- uCCGCGGCucggcaaAUGGGUguacgacgUGCCgcggCGGGGCCg -3'
miRNA:   3'- -GGUGCCGc------UGCCCAa-------GCGG----GCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 66640 0.66 0.776117
Target:  5'- gCCGcCGGUGACGuGGccguucagcUUGCCCGGcgcggacuGGCCa -3'
miRNA:   3'- -GGU-GCCGCUGC-CCa--------AGCGGGCC--------UUGG- -5'
20626 5' -58.8 NC_004688.1 + 68863 0.8 0.141275
Target:  5'- gCCugGGCGGCGGGgUCGCCggucCGGAcguagugguaGCCg -3'
miRNA:   3'- -GGugCCGCUGCCCaAGCGG----GCCU----------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.