Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20626 | 5' | -58.8 | NC_004688.1 | + | 64479 | 0.66 | 0.79409 |
Target: 5'- -aGCGGCaguGCuacGGUUCGgCCGGAugCa -3' miRNA: 3'- ggUGCCGc--UGc--CCAAGCgGGCCUugG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 102953 | 0.7 | 0.531471 |
Target: 5'- uCCGCGucgcuCGAcaagauuccgcuCGGGUUCGCCgagucgCGGAACCa -3' miRNA: 3'- -GGUGCc----GCU------------GCCCAAGCGG------GCCUUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 26398 | 0.7 | 0.541165 |
Target: 5'- aCACGGCGuCGuaGGUguaauccggCGUCgGGAGCCa -3' miRNA: 3'- gGUGCCGCuGC--CCAa--------GCGGgCCUUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 92646 | 0.7 | 0.560723 |
Target: 5'- uCCAggcCGGUGAUGGGgcccgUgGCgCCGGuGCCg -3' miRNA: 3'- -GGU---GCCGCUGCCCa----AgCG-GGCCuUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 74784 | 0.69 | 0.587418 |
Target: 5'- gCCACGGCGGCcaugccgaucucggGGGUgagggugaCGCCaaacuccuccuUGGGGCCa -3' miRNA: 3'- -GGUGCCGCUG--------------CCCAa-------GCGG-----------GCCUUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 93889 | 0.69 | 0.610341 |
Target: 5'- gCCGCGGUG-CGGGcgaugacgUCgGCCuguuCGGGGCCg -3' miRNA: 3'- -GGUGCCGCuGCCCa-------AG-CGG----GCCUUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 52921 | 0.69 | 0.630343 |
Target: 5'- aCCGCGGCc-CGGGggCaCCuCGGGGCUg -3' miRNA: 3'- -GGUGCCGcuGCCCaaGcGG-GCCUUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 101135 | 0.69 | 0.630343 |
Target: 5'- aCUuCGGCGACGGucaGUUCgucgGCCuCGGggUCg -3' miRNA: 3'- -GGuGCCGCUGCC---CAAG----CGG-GCCuuGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 84824 | 0.68 | 0.64035 |
Target: 5'- gCACGGCucCGGGgagGCCCGuGGGCa -3' miRNA: 3'- gGUGCCGcuGCCCaagCGGGC-CUUGg -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 57206 | 0.7 | 0.52184 |
Target: 5'- uUCugGGCcuGCGGGUcCGCCCaGGcuCCg -3' miRNA: 3'- -GGugCCGc-UGCCCAaGCGGG-CCuuGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 86622 | 0.71 | 0.50279 |
Target: 5'- cCCGCGuucggguuccaGCGACGGcGUccgucgCGCCCgugGGGACCg -3' miRNA: 3'- -GGUGC-----------CGCUGCC-CAa-----GCGGG---CCUUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 45156 | 0.71 | 0.50279 |
Target: 5'- cUCGgGGCaacgcCGGGgUCGCCCGGcGCCu -3' miRNA: 3'- -GGUgCCGcu---GCCCaAGCGGGCCuUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 56573 | 0.79 | 0.159326 |
Target: 5'- cCCGCGGCGGcCGGGgaacaccagggCGUCCGGAuugGCCg -3' miRNA: 3'- -GGUGCCGCU-GCCCaa---------GCGGGCCU---UGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 60968 | 0.79 | 0.176801 |
Target: 5'- gCACGGgGccuauaGCGGGUUUGCCCGGuuCCg -3' miRNA: 3'- gGUGCCgC------UGCCCAAGCGGGCCuuGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 52477 | 0.78 | 0.195008 |
Target: 5'- aCCGCGGUguggcuGGCGGGcUUCGCCCuGGcGGCCg -3' miRNA: 3'- -GGUGCCG------CUGCCC-AAGCGGG-CC-UUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 79938 | 0.73 | 0.387744 |
Target: 5'- -gACGGCaGGcCGGGccCGCCCGGAucgACCg -3' miRNA: 3'- ggUGCCG-CU-GCCCaaGCGGGCCU---UGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 101026 | 0.73 | 0.401797 |
Target: 5'- cCCGCGGCuGccguagcuacguccGCGGGccCGCCCGGAugUc -3' miRNA: 3'- -GGUGCCG-C--------------UGCCCaaGCGGGCCUugG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 60889 | 0.72 | 0.456585 |
Target: 5'- uCCACGGCuGCGGGUcggcgaaaUCaaGCCCuGGuACCg -3' miRNA: 3'- -GGUGCCGcUGCCCA--------AG--CGGG-CCuUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 93941 | 0.71 | 0.474803 |
Target: 5'- aCACGGCGcCGGGgaaGCCCcaguaGGGCCc -3' miRNA: 3'- gGUGCCGCuGCCCaagCGGGc----CUUGG- -5' |
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20626 | 5' | -58.8 | NC_004688.1 | + | 109905 | 0.71 | 0.484048 |
Target: 5'- gUCACGGCGACGGGcUCaccauCCgCGGugacGACCu -3' miRNA: 3'- -GGUGCCGCUGCCCaAGc----GG-GCC----UUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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