miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20640 3' -47.4 NC_004688.1 + 19423 0.66 0.999417
Target:  5'- aCUCggggcggugGAACuuCACgCCCAGGccGAGCUCa -3'
miRNA:   3'- -GAGa--------UUUGuuGUGgGGGUCU--UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 70539 0.66 0.999417
Target:  5'- ---gAGGCAuGCGCCCCCuuucgggcauGGAaAAGCCCc -3'
miRNA:   3'- gagaUUUGU-UGUGGGGG----------UCU-UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 73770 0.66 0.999417
Target:  5'- -aUUGAGCGGgACCgCCAuGGcgGCCCa -3'
miRNA:   3'- gaGAUUUGUUgUGGgGGU-CUuuUGGG- -5'
20640 3' -47.4 NC_004688.1 + 63415 0.66 0.999273
Target:  5'- uUCgau-CGACACCCUCAaAAAauGCCCc -3'
miRNA:   3'- gAGauuuGUUGUGGGGGUcUUU--UGGG- -5'
20640 3' -47.4 NC_004688.1 + 27215 0.66 0.999273
Target:  5'- gCUCaAGAagauaGGCGCCCCCcacaAGGAcGCCUg -3'
miRNA:   3'- -GAGaUUUg----UUGUGGGGG----UCUUuUGGG- -5'
20640 3' -47.4 NC_004688.1 + 95173 0.66 0.999273
Target:  5'- -aUUGggUAACGCcggggggugaaCCCCAGAGAaaagagaaACCCa -3'
miRNA:   3'- gaGAUuuGUUGUG-----------GGGGUCUUU--------UGGG- -5'
20640 3' -47.4 NC_004688.1 + 89172 0.66 0.999173
Target:  5'- uUCUcAAC-GCGCUCCUGGAauucgcgguucaugcGAGCCCa -3'
miRNA:   3'- gAGAuUUGuUGUGGGGGUCU---------------UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 67914 0.66 0.9991
Target:  5'- -gCUu-GCGcACACCCCCGGGGuGGCgCCg -3'
miRNA:   3'- gaGAuuUGU-UGUGGGGGUCUU-UUG-GG- -5'
20640 3' -47.4 NC_004688.1 + 43955 0.66 0.9991
Target:  5'- uCUCcuUGAugGACuuaaguUCCCCGGAAAugUCg -3'
miRNA:   3'- -GAG--AUUugUUGu-----GGGGGUCUUUugGG- -5'
20640 3' -47.4 NC_004688.1 + 100973 0.66 0.998892
Target:  5'- --aUAGGCGACuuugaagaaACCCCCAGu--GCCa -3'
miRNA:   3'- gagAUUUGUUG---------UGGGGGUCuuuUGGg -5'
20640 3' -47.4 NC_004688.1 + 71902 0.66 0.998892
Target:  5'- ----uAACGACGgCCCCGGc-AACCCc -3'
miRNA:   3'- gagauUUGUUGUgGGGGUCuuUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 74558 0.66 0.998892
Target:  5'- gCUCggcgcGAACGACaACCCgaaaCCGGGAGACUg -3'
miRNA:   3'- -GAGa----UUUGUUG-UGGG----GGUCUUUUGGg -5'
20640 3' -47.4 NC_004688.1 + 56503 0.66 0.998892
Target:  5'- uCUCUGuGCGcuccuGCAUCgUCCuGAGAGCCCc -3'
miRNA:   3'- -GAGAUuUGU-----UGUGG-GGGuCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 42465 0.66 0.998892
Target:  5'- -aCUGAGCGuccaGCACUCgCCAGGcgAGGCCa -3'
miRNA:   3'- gaGAUUUGU----UGUGGG-GGUCU--UUUGGg -5'
20640 3' -47.4 NC_004688.1 + 93937 0.66 0.998892
Target:  5'- uUCaacACGGCGCcggggaagCCCCAGuAGGGCCCa -3'
miRNA:   3'- gAGauuUGUUGUG--------GGGGUC-UUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 97328 0.66 0.998644
Target:  5'- uUCgauGCcccGCACCUCCGGAuAGGCCUg -3'
miRNA:   3'- gAGauuUGu--UGUGGGGGUCU-UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 92583 0.66 0.998644
Target:  5'- uUCUuGGCGAUGCCCcagcugcgguCCAcGAGGCCCg -3'
miRNA:   3'- gAGAuUUGUUGUGGG----------GGUcUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 77732 0.66 0.998644
Target:  5'- gCUCguaggaGAugAAC-UCCCCGGggGcGCCCg -3'
miRNA:   3'- -GAGa-----UUugUUGuGGGGGUCuuU-UGGG- -5'
20640 3' -47.4 NC_004688.1 + 72218 0.66 0.998561
Target:  5'- aCUCUGGuagcccGCAcCGCCCCCGccuccgccaccaacGAGGgucACCCa -3'
miRNA:   3'- -GAGAUU------UGUuGUGGGGGU--------------CUUU---UGGG- -5'
20640 3' -47.4 NC_004688.1 + 78351 0.67 0.99835
Target:  5'- -----uGCAGaAUCUCCGGAAGGCCCu -3'
miRNA:   3'- gagauuUGUUgUGGGGGUCUUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.