Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 51770 | 0.68 | 0.991384 |
Target: 5'- aCGuaAUGUcaGGGGGGAGUAcuGCCCc- -3' miRNA: 3'- -GCcgUACA--UUCCCUUCAUuuUGGGcg -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 46405 | 0.67 | 0.996585 |
Target: 5'- gCGGCAUGgcguucuGGAGcGUAcacgcaucgaAGGCCCGCu -3' miRNA: 3'- -GCCGUACauuc---CCUU-CAU----------UUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 35964 | 0.75 | 0.814463 |
Target: 5'- uCGGCAUGUAAagcgccGGuuGUAuccuGAACCCGCa -3' miRNA: 3'- -GCCGUACAUUc-----CCuuCAU----UUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 23696 | 0.69 | 0.983414 |
Target: 5'- uGGCGauuucuGGGgcGUcAAAACCCGCa -3' miRNA: 3'- gCCGUacauu-CCCuuCA-UUUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 22786 | 0.7 | 0.978999 |
Target: 5'- uGGCAg--GAGGGAAucGGAAUUCGCg -3' miRNA: 3'- gCCGUacaUUCCCUUcaUUUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 11847 | 0.66 | 0.998622 |
Target: 5'- gGGCGUaUAAcuaaucGAAGUAGGGCCCGUu -3' miRNA: 3'- gCCGUAcAUUcc----CUUCAUUUUGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 2073 | 0.7 | 0.967653 |
Target: 5'- -uGUAUGUGGGGGAA---AAGCCCGa -3' miRNA: 3'- gcCGUACAUUCCCUUcauUUUGGGCg -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 446 | 0.69 | 0.987087 |
Target: 5'- gCGGCuucUGUAAGGGggGggcGcgUCUGCc -3' miRNA: 3'- -GCCGu--ACAUUCCCuuCau-UuuGGGCG- -5' |
|||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 249 | 0.67 | 0.995264 |
Target: 5'- aGGC-UGgcGGGGggGgguuuCCCGg -3' miRNA: 3'- gCCGuACauUCCCuuCauuuuGGGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home