Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2066 | 3' | -48.4 | NC_001348.1 | + | 123919 | 0.67 | 0.995969 |
Target: 5'- gGGCGacaGGGGGAcgcgGGUcuuGGGGCCCGCc -3' miRNA: 3'- gCCGUacaUUCCCU----UCA---UUUUGGGCG- -5' |
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2066 | 3' | -48.4 | NC_001348.1 | + | 115172 | 0.67 | 0.996225 |
Target: 5'- cCGGCAcgaagaucaagcauaUGUugaaacAGGGAGGUAccGGACCCu- -3' miRNA: 3'- -GCCGU---------------ACAu-----UCCCUUCAU--UUUGGGcg -5' |
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2066 | 3' | -48.4 | NC_001348.1 | + | 46405 | 0.67 | 0.996585 |
Target: 5'- gCGGCAUGgcguucuGGAGcGUAcacgcaucgaAGGCCCGCu -3' miRNA: 3'- -GCCGUACauuc---CCUU-CAU----------UUUGGGCG- -5' |
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2066 | 3' | -48.4 | NC_001348.1 | + | 121272 | 0.67 | 0.997121 |
Target: 5'- gCGGgGgauacAGGGGAG-AAGGCCUGCg -3' miRNA: 3'- -GCCgUacau-UCCCUUCaUUUUGGGCG- -5' |
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2066 | 3' | -48.4 | NC_001348.1 | + | 108520 | 0.67 | 0.997121 |
Target: 5'- gCGGgGgauacAGGGGAG-AAGGCCUGCg -3' miRNA: 3'- -GCCgUacau-UCCCUUCaUUUUGGGCG- -5' |
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2066 | 3' | -48.4 | NC_001348.1 | + | 84517 | 0.66 | 0.998329 |
Target: 5'- cCGGCGUGUAuaaAGGGAuuauaauuuaAGUc---CCCGg -3' miRNA: 3'- -GCCGUACAU---UCCCU----------UCAuuuuGGGCg -5' |
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2066 | 3' | -48.4 | NC_001348.1 | + | 11847 | 0.66 | 0.998622 |
Target: 5'- gGGCGUaUAAcuaaucGAAGUAGGGCCCGUu -3' miRNA: 3'- gCCGUAcAUUcc----CUUCAUUUUGGGCG- -5' |
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2066 | 3' | -48.4 | NC_001348.1 | + | 81063 | 0.66 | 0.998823 |
Target: 5'- aGGCcgGUcagcgggaauuaaAAGuGGAGGUAGAcauuggcGCCaCGCa -3' miRNA: 3'- gCCGuaCA-------------UUC-CCUUCAUUU-------UGG-GCG- -5' |
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2066 | 3' | -48.4 | NC_001348.1 | + | 75800 | 0.66 | 0.99887 |
Target: 5'- gGGUAUGUGGGcGuGGUGAAAUuaUCGCg -3' miRNA: 3'- gCCGUACAUUCcCuUCAUUUUG--GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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