miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20708 5' -67.2 NC_004688.1 + 32315 0.66 0.365832
Target:  5'- cGGCCuUGCUGaaGGccgauucgaugguGGCCUCgACCGa -3'
miRNA:   3'- aCCGGcACGGCggCC-------------CCGGAGgUGGC- -5'
20708 5' -67.2 NC_004688.1 + 87982 0.66 0.365832
Target:  5'- aGGUC--GCCGCCGcGGcGCCUaccccuaCCGCCGc -3'
miRNA:   3'- aCCGGcaCGGCGGC-CC-CGGA-------GGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 25609 0.66 0.362036
Target:  5'- cGGCCaGcGCCGCCuGGugcucuuucuccuccGCCUCCGCgGc -3'
miRNA:   3'- aCCGG-CaCGGCGGcCC---------------CGGAGGUGgC- -5'
20708 5' -67.2 NC_004688.1 + 104707 0.66 0.344199
Target:  5'- gGGCUGUGUgCGCUGGucGGCCgCCGucCCGg -3'
miRNA:   3'- aCCGGCACG-GCGGCC--CCGGaGGU--GGC- -5'
20708 5' -67.2 NC_004688.1 + 15351 0.66 0.332664
Target:  5'- cGGCCagggGCCGCCGGaGuggcgcaacccccagGCC-CCGCCa -3'
miRNA:   3'- aCCGGca--CGGCGGCC-C---------------CGGaGGUGGc -5'
20708 5' -67.2 NC_004688.1 + 76976 0.66 0.329825
Target:  5'- aGGCCGccaacgagcccuUGCCGCCGuuaccGGCa-CCACCa -3'
miRNA:   3'- aCCGGC------------ACGGCGGCc----CCGgaGGUGGc -5'
20708 5' -67.2 NC_004688.1 + 79813 0.66 0.329825
Target:  5'- aGGgUGUaGCCGuuGGuGCCcCCGCCGa -3'
miRNA:   3'- aCCgGCA-CGGCggCCcCGGaGGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 49851 0.66 0.329825
Target:  5'- aGGCCauGUGaCCuccgGCCGaGGCC-CCGCCGa -3'
miRNA:   3'- aCCGG--CAC-GG----CGGCcCCGGaGGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 35353 0.66 0.322806
Target:  5'- aUGGCCGaguucagGUCGCuCGGGGUC-CaggaGCCGa -3'
miRNA:   3'- -ACCGGCa------CGGCG-GCCCCGGaGg---UGGC- -5'
20708 5' -67.2 NC_004688.1 + 84563 0.67 0.309103
Target:  5'- aGGCCGccGCC-CUGGGGCUgCCAgCCu -3'
miRNA:   3'- aCCGGCa-CGGcGGCCCCGGaGGU-GGc -5'
20708 5' -67.2 NC_004688.1 + 76520 0.67 0.289389
Target:  5'- cUGGCCGgucuCCGCgCGGGacuCCUCCACa- -3'
miRNA:   3'- -ACCGGCac--GGCG-GCCCc--GGAGGUGgc -5'
20708 5' -67.2 NC_004688.1 + 23412 0.67 0.283041
Target:  5'- cGGaaG-GUCGCCGGGGCUcaUCCAgCa -3'
miRNA:   3'- aCCggCaCGGCGGCCCCGG--AGGUgGc -5'
20708 5' -67.2 NC_004688.1 + 84279 0.68 0.276185
Target:  5'- cGGCCGUuCCGCCaagggcGGGCUUggccugagaaaggCCGCCGa -3'
miRNA:   3'- aCCGGCAcGGCGGc-----CCCGGA-------------GGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 50052 0.68 0.270675
Target:  5'- cUGGCCGcggcgGUCGCCaauGGuccaGGCC-CCGCCGg -3'
miRNA:   3'- -ACCGGCa----CGGCGG---CC----CCGGaGGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 45402 0.68 0.268859
Target:  5'- aGGCCGUGCCaCgGGuGGCcCUCCGggaugcggacguauCCGu -3'
miRNA:   3'- aCCGGCACGGcGgCC-CCG-GAGGU--------------GGC- -5'
20708 5' -67.2 NC_004688.1 + 85060 0.68 0.265255
Target:  5'- gGGUCGaUGCCGCCaccccgggcgaagucGGGCUUCUGCUGg -3'
miRNA:   3'- aCCGGC-ACGGCGGc--------------CCCGGAGGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 71176 0.68 0.258164
Target:  5'- gGGCCGU-CCGgCGggguugguuucucGGGCCUUCGCCc -3'
miRNA:   3'- aCCGGCAcGGCgGC-------------CCCGGAGGUGGc -5'
20708 5' -67.2 NC_004688.1 + 73505 0.68 0.252948
Target:  5'- cUGGCCGaccagaUGCCGCCcuccacguaGGuGCCUgCCGCCa -3'
miRNA:   3'- -ACCGGC------ACGGCGG---------CCcCGGA-GGUGGc -5'
20708 5' -67.2 NC_004688.1 + 92661 0.68 0.252948
Target:  5'- gGGcCCGUGgCGCCGGuGCCgaCCAUCa -3'
miRNA:   3'- aCC-GGCACgGCGGCCcCGGa-GGUGGc -5'
20708 5' -67.2 NC_004688.1 + 28518 0.69 0.23081
Target:  5'- cGGCCuUGgCGC--GGGCCUUCACCGu -3'
miRNA:   3'- aCCGGcACgGCGgcCCCGGAGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.