Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 1842 | 0.66 | 0.853826 |
Target: 5'- cGCgGUUCGCGCCAagCUUGguggcggcggcgaagGCCUcCCCc -3' miRNA: 3'- -CG-CAAGCGCGGUa-GGAUa--------------CGGGuGGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 12974 | 0.66 | 0.868517 |
Target: 5'- gGCGUUCGgGUaauaCUcgGCCCACg- -3' miRNA: 3'- -CGCAAGCgCGguagGAuaCGGGUGgg -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 67997 | 0.66 | 0.868517 |
Target: 5'- aGCGUgagCGagaaGCCG-CCaAUGCCCGCa- -3' miRNA: 3'- -CGCAa--GCg---CGGUaGGaUACGGGUGgg -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 61943 | 0.66 | 0.86088 |
Target: 5'- cCGcgCGgGUCGUCCaugGCCUugCCg -3' miRNA: 3'- cGCaaGCgCGGUAGGauaCGGGugGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 102774 | 0.66 | 0.853032 |
Target: 5'- aGCGUcCGCGCCAgug---GCCCGuuuggcauCCCg -3' miRNA: 3'- -CGCAaGCGCGGUaggauaCGGGU--------GGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 68500 | 0.66 | 0.844978 |
Target: 5'- cGCcUUgGCGCuCAaaaaguauuUCCgcagAUGCUCGCCCg -3' miRNA: 3'- -CGcAAgCGCG-GU---------AGGa---UACGGGUGGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 22286 | 0.66 | 0.844978 |
Target: 5'- uGCGgagUCGCugggacGCCuUCCUcUGCUC-CCCa -3' miRNA: 3'- -CGCa--AGCG------CGGuAGGAuACGGGuGGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 46620 | 0.67 | 0.783473 |
Target: 5'- gGCGggcCGCcCCGUCaagaAUGaCCCGCCCa -3' miRNA: 3'- -CGCaa-GCGcGGUAGga--UAC-GGGUGGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 63368 | 0.67 | 0.808175 |
Target: 5'- cGCGUUCGCcacacGCCAUCCcucggggagguaggUGUuuacggGCgCGCCCc -3' miRNA: 3'- -CGCAAGCG-----CGGUAGG--------------AUA------CGgGUGGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 67676 | 0.67 | 0.801879 |
Target: 5'- -aGggUGCGCCAgCCUucgaGUGCCUugUCg -3' miRNA: 3'- cgCaaGCGCGGUaGGA----UACGGGugGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 41382 | 0.67 | 0.79367 |
Target: 5'- gGCGacagCGCGCCG-CCguaaacguaaggauUGCCgACCCg -3' miRNA: 3'- -CGCaa--GCGCGGUaGGau------------ACGGgUGGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 51365 | 0.67 | 0.792751 |
Target: 5'- cGCGgUCGCaccggGCCgGUCCUAccggcUGCUCGCCg -3' miRNA: 3'- -CGCaAGCG-----CGG-UAGGAU-----ACGGGUGGg -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 71726 | 0.67 | 0.792751 |
Target: 5'- aCGUUCcuggaaacgGUGCCGUCg-AUGUCCACCa -3' miRNA: 3'- cGCAAG---------CGCGGUAGgaUACGGGUGGg -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 27102 | 0.67 | 0.783473 |
Target: 5'- cGUGUccgaccaugUUGCGCCGUCUUGUcUCgCGCCCu -3' miRNA: 3'- -CGCA---------AGCGCGGUAGGAUAcGG-GUGGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 25173 | 0.68 | 0.764509 |
Target: 5'- aUGUccagCGCGCCGuuUCC-GUGCUCGCCg -3' miRNA: 3'- cGCAa---GCGCGGU--AGGaUACGGGUGGg -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 81759 | 0.68 | 0.764509 |
Target: 5'- uCGgcCGCGCCGggCCUAU-CgCACCCg -3' miRNA: 3'- cGCaaGCGCGGUa-GGAUAcGgGUGGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 23983 | 0.68 | 0.74506 |
Target: 5'- cCGccaGCGCC--CCggagAUGCCCGCCCc -3' miRNA: 3'- cGCaagCGCGGuaGGa---UACGGGUGGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 2932 | 0.68 | 0.735179 |
Target: 5'- uGCGcaCGCGCCG-CCUGgagcuguagGCCCAgCUg -3' miRNA: 3'- -CGCaaGCGCGGUaGGAUa--------CGGGUgGG- -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 45066 | 0.68 | 0.734185 |
Target: 5'- aGCGUUguggcgcCGCGCCuUCCacUGCCC-CCa -3' miRNA: 3'- -CGCAA-------GCGCGGuAGGauACGGGuGGg -5' |
|||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 33654 | 0.68 | 0.7232 |
Target: 5'- cCGgcCGCGCCGUCaccaggaccGCCCACgCCg -3' miRNA: 3'- cGCaaGCGCGGUAGgaua-----CGGGUG-GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home