miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20740 3' -56.1 NC_004688.1 + 12974 0.66 0.868517
Target:  5'- gGCGUUCGgGUaauaCUcgGCCCACg- -3'
miRNA:   3'- -CGCAAGCgCGguagGAuaCGGGUGgg -5'
20740 3' -56.1 NC_004688.1 + 95927 0.69 0.694828
Target:  5'- cGUGcgCGCGCCAg-----GCCCACCg -3'
miRNA:   3'- -CGCaaGCGCGGUaggauaCGGGUGGg -5'
20740 3' -56.1 NC_004688.1 + 96050 0.69 0.70908
Target:  5'- cGCGggCGCGUugCAUCUUGUugcgggugaaggcgcGCuCCGCCCu -3'
miRNA:   3'- -CGCaaGCGCG--GUAGGAUA---------------CG-GGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 33654 0.68 0.7232
Target:  5'- cCGgcCGCGCCGUCaccaggaccGCCCACgCCg -3'
miRNA:   3'- cGCaaGCGCGGUAGgaua-----CGGGUG-GG- -5'
20740 3' -56.1 NC_004688.1 + 45066 0.68 0.734185
Target:  5'- aGCGUUguggcgcCGCGCCuUCCacUGCCC-CCa -3'
miRNA:   3'- -CGCAA-------GCGCGGuAGGauACGGGuGGg -5'
20740 3' -56.1 NC_004688.1 + 2932 0.68 0.735179
Target:  5'- uGCGcaCGCGCCG-CCUGgagcuguagGCCCAgCUg -3'
miRNA:   3'- -CGCaaGCGCGGUaGGAUa--------CGGGUgGG- -5'
20740 3' -56.1 NC_004688.1 + 23983 0.68 0.74506
Target:  5'- cCGccaGCGCC--CCggagAUGCCCGCCCc -3'
miRNA:   3'- cGCaagCGCGGuaGGa---UACGGGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 81759 0.68 0.764509
Target:  5'- uCGgcCGCGCCGggCCUAU-CgCACCCg -3'
miRNA:   3'- cGCaaGCGCGGUa-GGAUAcGgGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 25173 0.68 0.764509
Target:  5'- aUGUccagCGCGCCGuuUCC-GUGCUCGCCg -3'
miRNA:   3'- cGCAa---GCGCGGU--AGGaUACGGGUGGg -5'
20740 3' -56.1 NC_004688.1 + 9838 0.69 0.684581
Target:  5'- cGCGgcugccguaGCuaCGUCCgcggGCCCGCCCg -3'
miRNA:   3'- -CGCaag------CGcgGUAGGaua-CGGGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 42357 0.69 0.684581
Target:  5'- gGCGUUgGCGUCGaCCgacuUGCCgGCCa -3'
miRNA:   3'- -CGCAAgCGCGGUaGGau--ACGGgUGGg -5'
20740 3' -56.1 NC_004688.1 + 87759 0.69 0.67429
Target:  5'- aCGUUCGCcUCGUCCUgcccuuugGUGCCC-CUCa -3'
miRNA:   3'- cGCAAGCGcGGUAGGA--------UACGGGuGGG- -5'
20740 3' -56.1 NC_004688.1 + 59132 0.72 0.520316
Target:  5'- -gGUUcCGCGcCCGUCaggAUGCuCCGCCCa -3'
miRNA:   3'- cgCAA-GCGC-GGUAGga-UACG-GGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 67245 0.71 0.560629
Target:  5'- -----gGCGCCGUCaugagAUGCCCACCg -3'
miRNA:   3'- cgcaagCGCGGUAGga---UACGGGUGGg -5'
20740 3' -56.1 NC_004688.1 + 21101 0.7 0.616257
Target:  5'- cGCGUUCGUGCCAguggCCUugacgcggaacuuccA-GCUCGCCg -3'
miRNA:   3'- -CGCAAGCGCGGUa---GGA---------------UaCGGGUGGg -5'
20740 3' -56.1 NC_004688.1 + 24222 0.7 0.6339
Target:  5'- gGCGUccgUCGCGCCcguggggaccguugCCgGUGCCCgggGCCCc -3'
miRNA:   3'- -CGCA---AGCGCGGua------------GGaUACGGG---UGGG- -5'
20740 3' -56.1 NC_004688.1 + 58538 0.7 0.652575
Target:  5'- aGCGgcagcggCGCaugGCCAUCCUguuccugGUGCCCugCg -3'
miRNA:   3'- -CGCaa-----GCG---CGGUAGGA-------UACGGGugGg -5'
20740 3' -56.1 NC_004688.1 + 27804 0.7 0.661896
Target:  5'- gGCGUagGCGCCcuugaacgugaCCguguaggGCCCGCCCg -3'
miRNA:   3'- -CGCAagCGCGGua---------GGaua----CGGGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 33850 0.69 0.67429
Target:  5'- aGCGggCGCGCC-----GUGgCCGCCCa -3'
miRNA:   3'- -CGCaaGCGCGGuaggaUACgGGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 6697 0.69 0.67429
Target:  5'- ----cCGCGCCG-CCgcgGCCCACCa -3'
miRNA:   3'- cgcaaGCGCGGUaGGauaCGGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.