Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20740 | 3' | -56.1 | NC_004688.1 | + | 73447 | 0.72 | 0.51041 |
Target: 5'- gGCGUcgaucuugCGCGCCGUCCccgacUCCACCCu -3' miRNA: 3'- -CGCAa-------GCGCGGUAGGauac-GGGUGGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 59132 | 0.72 | 0.520316 |
Target: 5'- -gGUUcCGCGcCCGUCaggAUGCuCCGCCCa -3' miRNA: 3'- cgCAA-GCGC-GGUAGga-UACG-GGUGGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 67245 | 0.71 | 0.560629 |
Target: 5'- -----gGCGCCGUCaugagAUGCCCACCg -3' miRNA: 3'- cgcaagCGCGGUAGga---UACGGGUGGg -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 21101 | 0.7 | 0.616257 |
Target: 5'- cGCGUUCGUGCCAguggCCUugacgcggaacuuccA-GCUCGCCg -3' miRNA: 3'- -CGCAAGCGCGGUa---GGA---------------UaCGGGUGGg -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 24222 | 0.7 | 0.6339 |
Target: 5'- gGCGUccgUCGCGCCcguggggaccguugCCgGUGCCCgggGCCCc -3' miRNA: 3'- -CGCA---AGCGCGGua------------GGaUACGGG---UGGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 58538 | 0.7 | 0.652575 |
Target: 5'- aGCGgcagcggCGCaugGCCAUCCUguuccugGUGCCCugCg -3' miRNA: 3'- -CGCaa-----GCG---CGGUAGGA-------UACGGGugGg -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 27804 | 0.7 | 0.661896 |
Target: 5'- gGCGUagGCGCCcuugaacgugaCCguguaggGCCCGCCCg -3' miRNA: 3'- -CGCAagCGCGGua---------GGaua----CGGGUGGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 33850 | 0.69 | 0.67429 |
Target: 5'- aGCGggCGCGCC-----GUGgCCGCCCa -3' miRNA: 3'- -CGCaaGCGCGGuaggaUACgGGUGGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 6697 | 0.69 | 0.67429 |
Target: 5'- ----cCGCGCCG-CCgcgGCCCACCa -3' miRNA: 3'- cgcaaGCGCGGUaGGauaCGGGUGGg -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 87759 | 0.69 | 0.67429 |
Target: 5'- aCGUUCGCcUCGUCCUgcccuuugGUGCCC-CUCa -3' miRNA: 3'- cGCAAGCGcGGUAGGA--------UACGGGuGGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 9838 | 0.69 | 0.684581 |
Target: 5'- cGCGgcugccguaGCuaCGUCCgcggGCCCGCCCg -3' miRNA: 3'- -CGCaag------CGcgGUAGGaua-CGGGUGGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 42357 | 0.69 | 0.684581 |
Target: 5'- gGCGUUgGCGUCGaCCgacuUGCCgGCCa -3' miRNA: 3'- -CGCAAgCGCGGUaGGau--ACGGgUGGg -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 95927 | 0.69 | 0.694828 |
Target: 5'- cGUGcgCGCGCCAg-----GCCCACCg -3' miRNA: 3'- -CGCaaGCGCGGUaggauaCGGGUGGg -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 96050 | 0.69 | 0.70908 |
Target: 5'- cGCGggCGCGUugCAUCUUGUugcgggugaaggcgcGCuCCGCCCu -3' miRNA: 3'- -CGCaaGCGCG--GUAGGAUA---------------CG-GGUGGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 33654 | 0.68 | 0.7232 |
Target: 5'- cCGgcCGCGCCGUCaccaggaccGCCCACgCCg -3' miRNA: 3'- cGCaaGCGCGGUAGgaua-----CGGGUG-GG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 45066 | 0.68 | 0.734185 |
Target: 5'- aGCGUUguggcgcCGCGCCuUCCacUGCCC-CCa -3' miRNA: 3'- -CGCAA-------GCGCGGuAGGauACGGGuGGg -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 2932 | 0.68 | 0.735179 |
Target: 5'- uGCGcaCGCGCCG-CCUGgagcuguagGCCCAgCUg -3' miRNA: 3'- -CGCaaGCGCGGUaGGAUa--------CGGGUgGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 23983 | 0.68 | 0.74506 |
Target: 5'- cCGccaGCGCC--CCggagAUGCCCGCCCc -3' miRNA: 3'- cGCaagCGCGGuaGGa---UACGGGUGGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 81759 | 0.68 | 0.764509 |
Target: 5'- uCGgcCGCGCCGggCCUAU-CgCACCCg -3' miRNA: 3'- cGCaaGCGCGGUa-GGAUAcGgGUGGG- -5' |
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20740 | 3' | -56.1 | NC_004688.1 | + | 25173 | 0.68 | 0.764509 |
Target: 5'- aUGUccagCGCGCCGuuUCC-GUGCUCGCCg -3' miRNA: 3'- cGCAa---GCGCGGU--AGGaUACGGGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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