miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20742 5' -62 NC_004688.1 + 21659 0.76 0.139375
Target:  5'- aGCCCauuccaggggGAUCUGGUUggaGCGCCcGCCGCCg -3'
miRNA:   3'- aCGGG----------CUAGGCCAG---CGCGGuCGGUGG- -5'
20742 5' -62 NC_004688.1 + 25944 0.75 0.161943
Target:  5'- cUGCCCcaauccuggCCGGUCGCgaGCgGGCCACCc -3'
miRNA:   3'- -ACGGGcua------GGCCAGCG--CGgUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 59977 0.74 0.201965
Target:  5'- gGCCCGAg--GGUgccacCGCGCCGGCgACCa -3'
miRNA:   3'- aCGGGCUaggCCA-----GCGCGGUCGgUGG- -5'
20742 5' -62 NC_004688.1 + 61184 0.74 0.211954
Target:  5'- gGCgaggaGAUCCGGagggugucguggUCGCGCCGGCcCACCa -3'
miRNA:   3'- aCGgg---CUAGGCC------------AGCGCGGUCG-GUGG- -5'
20742 5' -62 NC_004688.1 + 12823 0.73 0.220777
Target:  5'- aGCCCGAUUucaugcaaggucauUGG-CGCGCUAGCCAUUc -3'
miRNA:   3'- aCGGGCUAG--------------GCCaGCGCGGUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 46743 0.72 0.274692
Target:  5'- gGCCCuGAUcgCCGG-CGCGauGGCCACCa -3'
miRNA:   3'- aCGGG-CUA--GGCCaGCGCggUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 68848 0.72 0.274692
Target:  5'- cGCCCGAaCCGGuccugaUCGCauagGCCGGgCGCCc -3'
miRNA:   3'- aCGGGCUaGGCC------AGCG----CGGUCgGUGG- -5'
20742 5' -62 NC_004688.1 + 87652 0.72 0.281079
Target:  5'- cGCCCGAaccacggUCGGUCG-GCCcgcgcGCCACCc -3'
miRNA:   3'- aCGGGCUa------GGCCAGCgCGGu----CGGUGG- -5'
20742 5' -62 NC_004688.1 + 44089 0.71 0.292871
Target:  5'- -cCCCG-UCCGGguugaggaugucgUCGCGCCagacguaggcaaaGGCCACCg -3'
miRNA:   3'- acGGGCuAGGCC-------------AGCGCGG-------------UCGGUGG- -5'
20742 5' -62 NC_004688.1 + 39863 0.71 0.294204
Target:  5'- cGCCgGGUCCGGUgGCGCaggcguGCUugUa -3'
miRNA:   3'- aCGGgCUAGGCCAgCGCGgu----CGGugG- -5'
20742 5' -62 NC_004688.1 + 25445 0.71 0.300944
Target:  5'- uUGCCCccgacGAUCCGccgaaCGCGCCggGGCCGCUg -3'
miRNA:   3'- -ACGGG-----CUAGGCca---GCGCGG--UCGGUGG- -5'
20742 5' -62 NC_004688.1 + 55850 0.71 0.307112
Target:  5'- uUGCCCGAUCCgcagcagucguGGUCgugaucgagguggGCGCC-GCgACCg -3'
miRNA:   3'- -ACGGGCUAGG-----------CCAG-------------CGCGGuCGgUGG- -5'
20742 5' -62 NC_004688.1 + 31256 0.71 0.307803
Target:  5'- cGCgCGuaUCGGcCGCGCCGGCgACCu -3'
miRNA:   3'- aCGgGCuaGGCCaGCGCGGUCGgUGG- -5'
20742 5' -62 NC_004688.1 + 56312 0.71 0.31478
Target:  5'- -uCCCGAuaUCCGaGUCGCcggcuuccaGCgCGGCCACCu -3'
miRNA:   3'- acGGGCU--AGGC-CAGCG---------CG-GUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 53643 0.71 0.321876
Target:  5'- cGCCCaGGcUCCGGcauugaCGuCGCCGGCCugCu -3'
miRNA:   3'- aCGGG-CU-AGGCCa-----GC-GCGGUCGGugG- -5'
20742 5' -62 NC_004688.1 + 91036 0.7 0.329092
Target:  5'- uUG-CCGGUCUGGacgUCGCcCCAcGCCACCa -3'
miRNA:   3'- -ACgGGCUAGGCC---AGCGcGGU-CGGUGG- -5'
20742 5' -62 NC_004688.1 + 59310 0.7 0.351448
Target:  5'- cUGCCCGAcgcgaUGGcCGcCGCCGGCUACg -3'
miRNA:   3'- -ACGGGCUag---GCCaGC-GCGGUCGGUGg -5'
20742 5' -62 NC_004688.1 + 100561 0.7 0.359136
Target:  5'- uUGCggCGAUacugCGGcccccCGCGCCGGCCGCCg -3'
miRNA:   3'- -ACGg-GCUAg---GCCa----GCGCGGUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 89804 0.7 0.36694
Target:  5'- cGCCagCGAUgUCGGggcCGCGCCAGCCGg- -3'
miRNA:   3'- aCGG--GCUA-GGCCa--GCGCGGUCGGUgg -5'
20742 5' -62 NC_004688.1 + 58819 0.69 0.382896
Target:  5'- cUGCCuCGucgCCGG-CGCcgggGCCAucGCCACCa -3'
miRNA:   3'- -ACGG-GCua-GGCCaGCG----CGGU--CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.