miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20742 5' -62 NC_004688.1 + 1124 0.66 0.594113
Target:  5'- aGUCCGGUCCGuagCGgauUGCCAcGCgCACCu -3'
miRNA:   3'- aCGGGCUAGGCca-GC---GCGGU-CG-GUGG- -5'
20742 5' -62 NC_004688.1 + 1454 0.66 0.564434
Target:  5'- gGCUCGGUCCauaaaGGUCauaGCUAGgCGCCu -3'
miRNA:   3'- aCGGGCUAGG-----CCAGcg-CGGUCgGUGG- -5'
20742 5' -62 NC_004688.1 + 5523 0.66 0.57429
Target:  5'- gUGacaCUGAUCUGGUgGC-CCGugacGCCGCCg -3'
miRNA:   3'- -ACg--GGCUAGGCCAgCGcGGU----CGGUGG- -5'
20742 5' -62 NC_004688.1 + 7891 0.66 0.573303
Target:  5'- cGCUCGGguucgCCGaGUCGCggaaccaccgcagGCCAuagcguucgGCCGCCa -3'
miRNA:   3'- aCGGGCUa----GGC-CAGCG-------------CGGU---------CGGUGG- -5'
20742 5' -62 NC_004688.1 + 9609 0.68 0.478392
Target:  5'- cGCgCCGAUCUcGUCGaagGCCAcGCaCGCCg -3'
miRNA:   3'- aCG-GGCUAGGcCAGCg--CGGU-CG-GUGG- -5'
20742 5' -62 NC_004688.1 + 11611 0.66 0.564434
Target:  5'- aGCCUGAUCuuCGGgggcgaGCGCCucaaacuGCgGCCa -3'
miRNA:   3'- aCGGGCUAG--GCCag----CGCGGu------CGgUGG- -5'
20742 5' -62 NC_004688.1 + 12823 0.73 0.220777
Target:  5'- aGCCCGAUUucaugcaaggucauUGG-CGCGCUAGCCAUUc -3'
miRNA:   3'- aCGGGCUAG--------------GCCaGCGCGGUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 20995 0.68 0.460127
Target:  5'- cGUCa-GUCCaGGUCGCGCC-GUCAUCg -3'
miRNA:   3'- aCGGgcUAGG-CCAGCGCGGuCGGUGG- -5'
20742 5' -62 NC_004688.1 + 21659 0.76 0.139375
Target:  5'- aGCCCauuccaggggGAUCUGGUUggaGCGCCcGCCGCCg -3'
miRNA:   3'- aCGGG----------CUAGGCCAG---CGCGGuCGGUGG- -5'
20742 5' -62 NC_004688.1 + 23085 0.66 0.57429
Target:  5'- -aCCCGAgacgCCGa--GCGCCAGCgUGCCa -3'
miRNA:   3'- acGGGCUa---GGCcagCGCGGUCG-GUGG- -5'
20742 5' -62 NC_004688.1 + 25445 0.71 0.300944
Target:  5'- uUGCCCccgacGAUCCGccgaaCGCGCCggGGCCGCUg -3'
miRNA:   3'- -ACGGG-----CUAGGCca---GCGCGG--UCGGUGG- -5'
20742 5' -62 NC_004688.1 + 25744 0.67 0.506437
Target:  5'- cGCCCcg-CCGGggcCGCCuugggGGCCGCCg -3'
miRNA:   3'- aCGGGcuaGGCCagcGCGG-----UCGGUGG- -5'
20742 5' -62 NC_004688.1 + 25944 0.75 0.161943
Target:  5'- cUGCCCcaauccuggCCGGUCGCgaGCgGGCCACCc -3'
miRNA:   3'- -ACGGGcua------GGCCAGCG--CGgUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 26356 0.67 0.50077
Target:  5'- aGCCCGcgCCcauggcgcccuggauGG-CaGCGCCcgcaaGGCCACCg -3'
miRNA:   3'- aCGGGCuaGG---------------CCaG-CGCGG-----UCGGUGG- -5'
20742 5' -62 NC_004688.1 + 27644 0.67 0.487658
Target:  5'- aGCCgGAUagCGGUCGgGCC-GCCaaacACCu -3'
miRNA:   3'- aCGGgCUAg-GCCAGCgCGGuCGG----UGG- -5'
20742 5' -62 NC_004688.1 + 29619 0.67 0.525517
Target:  5'- aG-CCGAUCUuGUCcauGCGCCAGuUCACCg -3'
miRNA:   3'- aCgGGCUAGGcCAG---CGCGGUC-GGUGG- -5'
20742 5' -62 NC_004688.1 + 29701 0.68 0.460127
Target:  5'- uUGCCCGG-CUGGggaUCaC-CCGGCCGCCa -3'
miRNA:   3'- -ACGGGCUaGGCC---AGcGcGGUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 31256 0.71 0.307803
Target:  5'- cGCgCGuaUCGGcCGCGCCGGCgACCu -3'
miRNA:   3'- aCGgGCuaGGCCaGCGCGGUCGgUGG- -5'
20742 5' -62 NC_004688.1 + 33090 0.68 0.460127
Target:  5'- aGCCCcacgauGUUCGGggaauggUGCGCCAGCguCCa -3'
miRNA:   3'- aCGGGc-----UAGGCCa------GCGCGGUCGguGG- -5'
20742 5' -62 NC_004688.1 + 33663 0.66 0.584185
Target:  5'- gUGUuaCCG--CCGGcCGCGCC-GUCACCa -3'
miRNA:   3'- -ACG--GGCuaGGCCaGCGCGGuCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.