Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20742 | 5' | -62 | NC_004688.1 | + | 1124 | 0.66 | 0.594113 |
Target: 5'- aGUCCGGUCCGuagCGgauUGCCAcGCgCACCu -3' miRNA: 3'- aCGGGCUAGGCca-GC---GCGGU-CG-GUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 31256 | 0.71 | 0.307803 |
Target: 5'- cGCgCGuaUCGGcCGCGCCGGCgACCu -3' miRNA: 3'- aCGgGCuaGGCCaGCGCGGUCGgUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 56312 | 0.71 | 0.31478 |
Target: 5'- -uCCCGAuaUCCGaGUCGCcggcuuccaGCgCGGCCACCu -3' miRNA: 3'- acGGGCU--AGGC-CAGCG---------CG-GUCGGUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 53643 | 0.71 | 0.321876 |
Target: 5'- cGCCCaGGcUCCGGcauugaCGuCGCCGGCCugCu -3' miRNA: 3'- aCGGG-CU-AGGCCa-----GC-GCGGUCGGugG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 91036 | 0.7 | 0.329092 |
Target: 5'- uUG-CCGGUCUGGacgUCGCcCCAcGCCACCa -3' miRNA: 3'- -ACgGGCUAGGCC---AGCGcGGU-CGGUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 59310 | 0.7 | 0.351448 |
Target: 5'- cUGCCCGAcgcgaUGGcCGcCGCCGGCUACg -3' miRNA: 3'- -ACGGGCUag---GCCaGC-GCGGUCGGUGg -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 100561 | 0.7 | 0.359136 |
Target: 5'- uUGCggCGAUacugCGGcccccCGCGCCGGCCGCCg -3' miRNA: 3'- -ACGg-GCUAg---GCCa----GCGCGGUCGGUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 89804 | 0.7 | 0.36694 |
Target: 5'- cGCCagCGAUgUCGGggcCGCGCCAGCCGg- -3' miRNA: 3'- aCGG--GCUA-GGCCa--GCGCGGUCGGUgg -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 64917 | 0.69 | 0.382896 |
Target: 5'- gGCgUCGAggCCGGUCauUGCuCAGCCACCa -3' miRNA: 3'- aCG-GGCUa-GGCCAGc-GCG-GUCGGUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 55850 | 0.71 | 0.307112 |
Target: 5'- uUGCCCGAUCCgcagcagucguGGUCgugaucgagguggGCGCC-GCgACCg -3' miRNA: 3'- -ACGGGCUAGG-----------CCAG-------------CGCGGuCGgUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 25445 | 0.71 | 0.300944 |
Target: 5'- uUGCCCccgacGAUCCGccgaaCGCGCCggGGCCGCUg -3' miRNA: 3'- -ACGGG-----CUAGGCca---GCGCGG--UCGGUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 39863 | 0.71 | 0.294204 |
Target: 5'- cGCCgGGUCCGGUgGCGCaggcguGCUugUa -3' miRNA: 3'- aCGGgCUAGGCCAgCGCGgu----CGGugG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 25944 | 0.75 | 0.161943 |
Target: 5'- cUGCCCcaauccuggCCGGUCGCgaGCgGGCCACCc -3' miRNA: 3'- -ACGGGcua------GGCCAGCG--CGgUCGGUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 59977 | 0.74 | 0.201965 |
Target: 5'- gGCCCGAg--GGUgccacCGCGCCGGCgACCa -3' miRNA: 3'- aCGGGCUaggCCA-----GCGCGGUCGgUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 61184 | 0.74 | 0.211954 |
Target: 5'- gGCgaggaGAUCCGGagggugucguggUCGCGCCGGCcCACCa -3' miRNA: 3'- aCGgg---CUAGGCC------------AGCGCGGUCG-GUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 12823 | 0.73 | 0.220777 |
Target: 5'- aGCCCGAUUucaugcaaggucauUGG-CGCGCUAGCCAUUc -3' miRNA: 3'- aCGGGCUAG--------------GCCaGCGCGGUCGGUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 68848 | 0.72 | 0.274692 |
Target: 5'- cGCCCGAaCCGGuccugaUCGCauagGCCGGgCGCCc -3' miRNA: 3'- aCGGGCUaGGCC------AGCG----CGGUCgGUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 46743 | 0.72 | 0.274692 |
Target: 5'- gGCCCuGAUcgCCGG-CGCGauGGCCACCa -3' miRNA: 3'- aCGGG-CUA--GGCCaGCGCggUCGGUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 87652 | 0.72 | 0.281079 |
Target: 5'- cGCCCGAaccacggUCGGUCG-GCCcgcgcGCCACCc -3' miRNA: 3'- aCGGGCUa------GGCCAGCgCGGu----CGGUGG- -5' |
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20742 | 5' | -62 | NC_004688.1 | + | 44089 | 0.71 | 0.292871 |
Target: 5'- -cCCCG-UCCGGguugaggaugucgUCGCGCCagacguaggcaaaGGCCACCg -3' miRNA: 3'- acGGGCuAGGCC-------------AGCGCGG-------------UCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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