miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20795 5' -52.6 NC_004689.1 + 62973 0.66 0.899079
Target:  5'- --aGCcGC-GCACCGGuACCgggaaaUCACGCg -3'
miRNA:   3'- cgaCGuUGaCGUGGUC-UGGa-----AGUGCG- -5'
20795 5' -52.6 NC_004689.1 + 3740 0.66 0.891974
Target:  5'- cCUGCGACggGUugUAaACCagUUCGCGCa -3'
miRNA:   3'- cGACGUUGa-CGugGUcUGG--AAGUGCG- -5'
20795 5' -52.6 NC_004689.1 + 31586 0.66 0.884602
Target:  5'- -aUGCAACUGggagGCCAGACCca-GCGa -3'
miRNA:   3'- cgACGUUGACg---UGGUCUGGaagUGCg -5'
20795 5' -52.6 NC_004689.1 + 39190 0.66 0.884602
Target:  5'- cGCUGC-ACUGCAUCGGucgcauCgaUC-CGCa -3'
miRNA:   3'- -CGACGuUGACGUGGUCu-----GgaAGuGCG- -5'
20795 5' -52.6 NC_004689.1 + 15441 0.66 0.876967
Target:  5'- --gGCAuaugGCACCAGACCaugaggUCuCGCg -3'
miRNA:   3'- cgaCGUuga-CGUGGUCUGGa-----AGuGCG- -5'
20795 5' -52.6 NC_004689.1 + 17651 0.66 0.876967
Target:  5'- aCUGCGGCUGgauaaCACCAG-CCUgCACa- -3'
miRNA:   3'- cGACGUUGAC-----GUGGUCuGGAaGUGcg -5'
20795 5' -52.6 NC_004689.1 + 69991 0.66 0.876967
Target:  5'- cGCUcGCGAUguaCACCAuucGACUUgaUCACGCg -3'
miRNA:   3'- -CGA-CGUUGac-GUGGU---CUGGA--AGUGCG- -5'
20795 5' -52.6 NC_004689.1 + 3351 0.66 0.869077
Target:  5'- uGgUGCAGaucguaGUACCAGuucuuuCCUUCugGCg -3'
miRNA:   3'- -CgACGUUga----CGUGGUCu-----GGAAGugCG- -5'
20795 5' -52.6 NC_004689.1 + 44887 0.67 0.860938
Target:  5'- cGCUGCGgaGCuUGCGCggauCGGGCCUgccggUCACcGCu -3'
miRNA:   3'- -CGACGU--UG-ACGUG----GUCUGGA-----AGUG-CG- -5'
20795 5' -52.6 NC_004689.1 + 51341 0.67 0.86011
Target:  5'- cCUGCGaaACUGCaaaccccGCCAgGGCUUUC-CGCa -3'
miRNA:   3'- cGACGU--UGACG-------UGGU-CUGGAAGuGCG- -5'
20795 5' -52.6 NC_004689.1 + 11064 0.67 0.847415
Target:  5'- uGCUGCGgguuguucggaucggGCUGCugCucgGGACCUuUCGaaaGCa -3'
miRNA:   3'- -CGACGU---------------UGACGugG---UCUGGA-AGUg--CG- -5'
20795 5' -52.6 NC_004689.1 + 12409 0.67 0.843941
Target:  5'- cGUUGUAcGCcugGUugCGGAUgUUCGCGCg -3'
miRNA:   3'- -CGACGU-UGa--CGugGUCUGgAAGUGCG- -5'
20795 5' -52.6 NC_004689.1 + 26301 0.67 0.843941
Target:  5'- aGUUGaa--UGCGCCuucGACCUUgACGCc -3'
miRNA:   3'- -CGACguugACGUGGu--CUGGAAgUGCG- -5'
20795 5' -52.6 NC_004689.1 + 41774 0.67 0.843941
Target:  5'- cGCuUGCAGCcgguUGCcgcCCAGuGCCUUgACGCc -3'
miRNA:   3'- -CG-ACGUUG----ACGu--GGUC-UGGAAgUGCG- -5'
20795 5' -52.6 NC_004689.1 + 19751 0.68 0.81678
Target:  5'- --gGCAACcaaauccuuUGUGCCGGagacGCUUUCACGCa -3'
miRNA:   3'- cgaCGUUG---------ACGUGGUC----UGGAAGUGCG- -5'
20795 5' -52.6 NC_004689.1 + 30239 0.68 0.80732
Target:  5'- cGCUGCGACcaacccUGCACCGGcuGCCgaUC-CGUu -3'
miRNA:   3'- -CGACGUUG------ACGUGGUC--UGGa-AGuGCG- -5'
20795 5' -52.6 NC_004689.1 + 60938 0.68 0.797674
Target:  5'- cGCUGguGCUGC-CCAGGugg-CGCGUg -3'
miRNA:   3'- -CGACguUGACGuGGUCUggaaGUGCG- -5'
20795 5' -52.6 NC_004689.1 + 55098 0.68 0.777867
Target:  5'- uUUGCAcucgcguucgaACUGCGCguGAUCaUUCACGUu -3'
miRNA:   3'- cGACGU-----------UGACGUGguCUGG-AAGUGCG- -5'
20795 5' -52.6 NC_004689.1 + 37540 0.69 0.744942
Target:  5'- gGCUGC-GCUGgaauagauuccaGCCAGACCaaUACGCa -3'
miRNA:   3'- -CGACGuUGACg-----------UGGUCUGGaaGUGCG- -5'
20795 5' -52.6 NC_004689.1 + 21054 0.71 0.638361
Target:  5'- aGCUGCcucguACUcagagguuugaaGCAagcCCAGACCUUCaaGCGCg -3'
miRNA:   3'- -CGACGu----UGA------------CGU---GGUCUGGAAG--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.