Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 109129 | 0.66 | 0.699613 |
Target: 5'- ---aGCGCucuACaCCCCAAcgcgcGGGGUCGCCUg -3' miRNA: 3'- uuugUGCG---UG-GGGGUU-----CCUCGGCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 120663 | 0.66 | 0.699613 |
Target: 5'- ---aGCGCucuACaCCCCAAcgcgcGGGGUCGCCUg -3' miRNA: 3'- uuugUGCG---UG-GGGGUU-----CCUCGGCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 82884 | 0.66 | 0.679469 |
Target: 5'- -cACuCGCACCCCCAcggauuagaucgAGGGuCCGUUCu -3' miRNA: 3'- uuUGuGCGUGGGGGU------------UCCUcGGCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 113737 | 0.66 | 0.669334 |
Target: 5'- gAAACACGCugCUCCAA--AGUCuCCCa -3' miRNA: 3'- -UUUGUGCGugGGGGUUccUCGGcGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 106894 | 0.66 | 0.659169 |
Target: 5'- ---gGCGUAuUCCCCGGGGGGCCcugcauacCCCg -3' miRNA: 3'- uuugUGCGU-GGGGGUUCCUCGGc-------GGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 96232 | 0.66 | 0.659169 |
Target: 5'- -uAC-CGgAUCCaCCAGGGuuGCUGCCCa -3' miRNA: 3'- uuUGuGCgUGGG-GGUUCCu-CGGCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 122898 | 0.66 | 0.659169 |
Target: 5'- ---gGCGUAuUCCCCGGGGGGCCcugcauacCCCg -3' miRNA: 3'- uuugUGCGU-GGGGGUUCCUCGGc-------GGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 104897 | 0.67 | 0.638784 |
Target: 5'- aGGGCugGCcuccuCUCCCGGGGuccgccGGgCGCCCa -3' miRNA: 3'- -UUUGugCGu----GGGGGUUCC------UCgGCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 15586 | 0.67 | 0.638784 |
Target: 5'- uAAGCGCGUACCU---GGGGGCCGUUUu -3' miRNA: 3'- -UUUGUGCGUGGGgguUCCUCGGCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 10796 | 0.67 | 0.638784 |
Target: 5'- --cUACGCAUCCCUuuuGGGGGUguguguaGCCCu -3' miRNA: 3'- uuuGUGCGUGGGGGu--UCCUCGg------CGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 294 | 0.67 | 0.618377 |
Target: 5'- cAGACGCGCcCCCCCcuuacAGaAGCCGCg- -3' miRNA: 3'- -UUUGUGCGuGGGGGu----UCcUCGGCGgg -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 105087 | 0.67 | 0.618377 |
Target: 5'- gGGACucCGuCACCCCCGacucugcgGGGGGCuccuccccccgCGCCCu -3' miRNA: 3'- -UUUGu-GC-GUGGGGGU--------UCCUCG-----------GCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 124705 | 0.67 | 0.618377 |
Target: 5'- gGGACucCGuCACCCCCGacucugcgGGGGGCuccuccccccgCGCCCu -3' miRNA: 3'- -UUUGu-GC-GUGGGGGU--------UCCUCG-----------GCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 106761 | 0.67 | 0.608185 |
Target: 5'- gGAAUACGCcgaaauCCCCCGuuuGGGCCgGUCCg -3' miRNA: 3'- -UUUGUGCGu-----GGGGGUuc-CUCGG-CGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 90798 | 0.67 | 0.598011 |
Target: 5'- ---aACGCAg--CCGAGGAcGCCGCCCu -3' miRNA: 3'- uuugUGCGUgggGGUUCCU-CGGCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 111839 | 0.68 | 0.587862 |
Target: 5'- gGGACACGCcggACUUCCGAcuauuGGAuuGUCGCCCg -3' miRNA: 3'- -UUUGUGCG---UGGGGGUU-----CCU--CGGCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 117952 | 0.68 | 0.587862 |
Target: 5'- gGGACACGCcggACUUCCGAcuauuGGAuuGUCGCCCg -3' miRNA: 3'- -UUUGUGCG---UGGGGGUU-----CCU--CGGCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 75612 | 0.68 | 0.577745 |
Target: 5'- gAGACGCGuCGCCCCUuAGGGGauGUCUu -3' miRNA: 3'- -UUUGUGC-GUGGGGGuUCCUCggCGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 105049 | 0.68 | 0.577745 |
Target: 5'- ---gGCGgACCCCgggaGAGGAgGCCaGCCCu -3' miRNA: 3'- uuugUGCgUGGGGg---UUCCU-CGG-CGGG- -5' |
|||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 63707 | 0.68 | 0.565656 |
Target: 5'- -cAUACGC-CCUCUuaacucaaacgcGGGAGCCGUCCa -3' miRNA: 3'- uuUGUGCGuGGGGGu-----------UCCUCGGCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home