miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2086 3' -49.2 NC_001348.1 + 76772 0.66 0.997753
Target:  5'- -aUUGCgcgaGUUCCCAagguauCCCCCa -3'
miRNA:   3'- caAAUGaug-CAAGGGUgguuu-GGGGG- -5'
2086 3' -49.2 NC_001348.1 + 39225 0.66 0.997753
Target:  5'- ---aGCgUACGUgUCCCccgauGCCAAcauauCCCCCg -3'
miRNA:   3'- caaaUG-AUGCA-AGGG-----UGGUUu----GGGGG- -5'
2086 3' -49.2 NC_001348.1 + 93677 0.66 0.997753
Target:  5'- aUUUAUUcCGgacaUCCCAUCGGccAUCCCCg -3'
miRNA:   3'- cAAAUGAuGCa---AGGGUGGUU--UGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 120958 0.66 0.997713
Target:  5'- ---aACgaucuCGUguucccgUCCCACCAuGACCCCg -3'
miRNA:   3'- caaaUGau---GCA-------AGGGUGGU-UUGGGGg -5'
2086 3' -49.2 NC_001348.1 + 108833 0.66 0.997713
Target:  5'- ---aACgaucuCGUguucccgUCCCACCAuGACCCCg -3'
miRNA:   3'- caaaUGau---GCA-------AGGGUGGU-UUGGGGg -5'
2086 3' -49.2 NC_001348.1 + 121477 0.66 0.99763
Target:  5'- ---gACaGCGUUCCCGCUAagggggcaaaggcgGACCUgCCg -3'
miRNA:   3'- caaaUGaUGCAAGGGUGGU--------------UUGGG-GG- -5'
2086 3' -49.2 NC_001348.1 + 108315 0.66 0.99763
Target:  5'- ---gACaGCGUUCCCGCUAagggggcaaaggcgGACCUgCCg -3'
miRNA:   3'- caaaUGaUGCAAGGGUGGU--------------UUGGG-GG- -5'
2086 3' -49.2 NC_001348.1 + 98583 0.66 0.997175
Target:  5'- aUUU-CUAgGUUuugucuuaaauacaCCCGCCAugagcaucucugGACCCCCa -3'
miRNA:   3'- cAAAuGAUgCAA--------------GGGUGGU------------UUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 16133 0.66 0.996239
Target:  5'- ---gGCUACGcuUUUCCAauCCAAACCCa- -3'
miRNA:   3'- caaaUGAUGC--AAGGGU--GGUUUGGGgg -5'
2086 3' -49.2 NC_001348.1 + 46662 0.66 0.996239
Target:  5'- ---aGCaGCGU--CCGCUGAACCCCUa -3'
miRNA:   3'- caaaUGaUGCAagGGUGGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 50824 0.66 0.996239
Target:  5'- ---gACUGugacaGUgCCCACgGGGCCCCUg -3'
miRNA:   3'- caaaUGAUg----CAaGGGUGgUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 29019 0.66 0.996239
Target:  5'- -aUUugUACcccCCCACacAACCCCCu -3'
miRNA:   3'- caAAugAUGcaaGGGUGguUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 91068 0.66 0.995853
Target:  5'- ----uCUACGUUuucccCCCcuauagagcgggaagGCCAAACCUCCg -3'
miRNA:   3'- caaauGAUGCAA-----GGG---------------UGGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 83138 0.66 0.995578
Target:  5'- ----uUUGCGUUCCCACCAcaauACCg-- -3'
miRNA:   3'- caaauGAUGCAAGGGUGGUu---UGGggg -5'
2086 3' -49.2 NC_001348.1 + 121919 0.66 0.995578
Target:  5'- --cUGCUGCcuGUaguuucacuUCCCACCGAACgCgCCg -3'
miRNA:   3'- caaAUGAUG--CA---------AGGGUGGUUUGgG-GG- -5'
2086 3' -49.2 NC_001348.1 + 92573 0.66 0.995578
Target:  5'- ---gACUGCGcugCUCAucUCAAGCCCCUu -3'
miRNA:   3'- caaaUGAUGCaa-GGGU--GGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 38060 0.67 0.993009
Target:  5'- ---aACUGCGUguaUAUCAAACCCUCc -3'
miRNA:   3'- caaaUGAUGCAaggGUGGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 79377 0.67 0.990716
Target:  5'- ---gGCUaACG-UCCUaaauaAUCAAACCCCCu -3'
miRNA:   3'- caaaUGA-UGCaAGGG-----UGGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 105064 0.67 0.990716
Target:  5'- gGUUU-CUGgGcgCCCGgCGGACCCCg -3'
miRNA:   3'- -CAAAuGAUgCaaGGGUgGUUUGGGGg -5'
2086 3' -49.2 NC_001348.1 + 110837 0.67 0.990716
Target:  5'- --cUACUuuaAUGgaagugUCCCAUCG-ACCCCCu -3'
miRNA:   3'- caaAUGA---UGCa-----AGGGUGGUuUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.