Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 37470 | 0.67 | 0.805664 |
Target: 5'- gCGUGCGGccaUACGCGCGcaAUGCCg -3' miRNA: 3'- aGCGCGCUaagGUGCGUGCa-UACGGg -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 11454 | 0.67 | 0.805664 |
Target: 5'- cUGCGCcaccGAgaaccgCCGCGCccugaGCGUugAUGCCCa -3' miRNA: 3'- aGCGCG----CUaa----GGUGCG-----UGCA--UACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 1766 | 0.66 | 0.814923 |
Target: 5'- cCGCGUccGGUgaacagcuucUUCACGCgaGCGUucGUGCCCu -3' miRNA: 3'- aGCGCG--CUA----------AGGUGCG--UGCA--UACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 60967 | 0.66 | 0.823997 |
Target: 5'- gUCGUGgccuCGGUguacccccacUCCgGCGCugGUGcUGCCCa -3' miRNA: 3'- -AGCGC----GCUA----------AGG-UGCGugCAU-ACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 40850 | 0.66 | 0.823997 |
Target: 5'- -aGUGCGAUcUUCACGUugcCGUcgaGUGCCUg -3' miRNA: 3'- agCGCGCUA-AGGUGCGu--GCA---UACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 12515 | 0.66 | 0.823997 |
Target: 5'- -aGCGCGGUguugCCcgacCGCACGUaAUGCg- -3' miRNA: 3'- agCGCGCUAa---GGu---GCGUGCA-UACGgg -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 38527 | 0.66 | 0.823997 |
Target: 5'- -aGCcCGGUUCCGCGUAUccaacGCCCa -3' miRNA: 3'- agCGcGCUAAGGUGCGUGcaua-CGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 36231 | 0.66 | 0.831999 |
Target: 5'- aUCGCGCGcAUUacgcgaucguuuaUCGCGCACGUuaAUGUa- -3' miRNA: 3'- -AGCGCGC-UAA-------------GGUGCGUGCA--UACGgg -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 43676 | 0.66 | 0.841554 |
Target: 5'- gCGCcguauucaucaGCGAgUCCACcCACGggccguaAUGCCCg -3' miRNA: 3'- aGCG-----------CGCUaAGGUGcGUGCa------UACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 37120 | 0.66 | 0.849182 |
Target: 5'- cCGCGUGGUgagcacaucCCACGCcuucgcggucuucGCGggaaccuUGCCCg -3' miRNA: 3'- aGCGCGCUAa--------GGUGCG-------------UGCau-----ACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 54344 | 0.66 | 0.850019 |
Target: 5'- aUGCGCGAUUgcaUCACGCgACGguagucuucUGCCg -3' miRNA: 3'- aGCGCGCUAA---GGUGCG-UGCau-------ACGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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