miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2088 5' -54.8 NC_001348.1 + 16344 0.66 0.915182
Target:  5'- cGAGCGcGUGAggGAUGGAUGucuuauuCCAAcGCCCg -3'
miRNA:   3'- -UUCGCcCGCU--UUGCCUAU-------GGUU-CGGG- -5'
2088 5' -54.8 NC_001348.1 + 106682 0.66 0.909072
Target:  5'- cAGaCGGGCGAugguuuCGGGgguacaguacgccUugCGAGCCUg -3'
miRNA:   3'- uUC-GCCCGCUuu----GCCU-------------AugGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 123110 0.66 0.909072
Target:  5'- cAGaCGGGCGAugguuuCGGGgguacaguacgccUugCGAGCCUg -3'
miRNA:   3'- uUC-GCCCGCUuu----GCCU-------------AugGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 105426 0.66 0.90336
Target:  5'- gAGGgGGGCGGggacGACGGGgacgcACCGGGgUCa -3'
miRNA:   3'- -UUCgCCCGCU----UUGCCUa----UGGUUCgGG- -5'
2088 5' -54.8 NC_001348.1 + 124366 0.66 0.90336
Target:  5'- gAGGgGGGCGGggacGACGGGgacgcACCGGGgUCa -3'
miRNA:   3'- -UUCgCCCGCU----UUGCCUa----UGGUUCgGG- -5'
2088 5' -54.8 NC_001348.1 + 97667 0.66 0.90336
Target:  5'- cAGCGGuuaaUGggGCGGGUGCCGGGauugaCUg -3'
miRNA:   3'- uUCGCCc---GCuuUGCCUAUGGUUCg----GG- -5'
2088 5' -54.8 NC_001348.1 + 38860 0.66 0.889954
Target:  5'- cAGGCGGuuGAc-UGGAugUACCAAGCUCg -3'
miRNA:   3'- -UUCGCCcgCUuuGCCU--AUGGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 104492 0.66 0.889954
Target:  5'- uAGCGGGCGGuAGCGGcaccuCCGAcGCUUc -3'
miRNA:   3'- uUCGCCCGCU-UUGCCuau--GGUU-CGGG- -5'
2088 5' -54.8 NC_001348.1 + 70706 0.66 0.88289
Target:  5'- -uGgGGGUGAuACGGAcuuacUAUUAAGCUCu -3'
miRNA:   3'- uuCgCCCGCUuUGCCU-----AUGGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 113287 0.67 0.852336
Target:  5'- aAAGCGGGUcaacgucaaGGAACGGccACCGAGgcaaCCg -3'
miRNA:   3'- -UUCGCCCG---------CUUUGCCuaUGGUUCg---GG- -5'
2088 5' -54.8 NC_001348.1 + 41560 0.68 0.835768
Target:  5'- -cGCGGGCugcGCGGGcUGCgCGGGCCg -3'
miRNA:   3'- uuCGCCCGcuuUGCCU-AUG-GUUCGGg -5'
2088 5' -54.8 NC_001348.1 + 121248 0.68 0.835768
Target:  5'- -uGCGGGaaCGGAGgGGucGUACCucuGCCCg -3'
miRNA:   3'- uuCGCCC--GCUUUgCC--UAUGGuu-CGGG- -5'
2088 5' -54.8 NC_001348.1 + 108544 0.68 0.835768
Target:  5'- -uGCGGGaaCGGAGgGGucGUACCucuGCCCg -3'
miRNA:   3'- uuCGCCC--GCUUUgCC--UAUGGuu-CGGG- -5'
2088 5' -54.8 NC_001348.1 + 124674 0.68 0.827187
Target:  5'- cGGGCGGGCGAcgGGCGGGcuggucggACCccccCCCg -3'
miRNA:   3'- -UUCGCCCGCU--UUGCCUa-------UGGuuc-GGG- -5'
2088 5' -54.8 NC_001348.1 + 105118 0.68 0.827187
Target:  5'- cGGGCGGGCGAcgGGCGGGcuggucggACCccccCCCg -3'
miRNA:   3'- -UUCGCCCGCU--UUGCCUa-------UGGuuc-GGG- -5'
2088 5' -54.8 NC_001348.1 + 41596 0.68 0.827187
Target:  5'- -cGCGGGCuGGACGGucUGCgCGGGCUg -3'
miRNA:   3'- uuCGCCCGcUUUGCCu-AUG-GUUCGGg -5'
2088 5' -54.8 NC_001348.1 + 60967 0.69 0.752545
Target:  5'- cAGGCGGGUG---UGGAgauCCAuauGGCCCg -3'
miRNA:   3'- -UUCGCCCGCuuuGCCUau-GGU---UCGGG- -5'
2088 5' -54.8 NC_001348.1 + 20741 0.69 0.742608
Target:  5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3'
miRNA:   3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 20699 0.69 0.742608
Target:  5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3'
miRNA:   3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 20909 0.69 0.742608
Target:  5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3'
miRNA:   3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.