miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21040 3' -52.6 NC_004745.1 + 4168 0.66 0.718958
Target:  5'- uUCACCguugAACCGuCGGUcACCCAGa -3'
miRNA:   3'- -AGUGGacuaUUGGCcGCUA-UGGGUCg -5'
21040 3' -52.6 NC_004745.1 + 10203 0.66 0.718958
Target:  5'- aUCACCcgUGAgccGACCGGUG-UGCgCAGg -3'
miRNA:   3'- -AGUGG--ACUa--UUGGCCGCuAUGgGUCg -5'
21040 3' -52.6 NC_004745.1 + 9262 0.66 0.718958
Target:  5'- ---aCUGAUGcacACUGGCGAUuuUCGGCg -3'
miRNA:   3'- agugGACUAU---UGGCCGCUAugGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 8079 0.66 0.707593
Target:  5'- gUCugCUGuucACUGGCGAcguuauucgcccUGUCCAGCg -3'
miRNA:   3'- -AGugGACuauUGGCCGCU------------AUGGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 8767 0.66 0.707593
Target:  5'- -aGCCUGAUgcuGACCGaGCGAacgcUGgUCAGUg -3'
miRNA:   3'- agUGGACUA---UUGGC-CGCU----AUgGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 8901 0.66 0.696145
Target:  5'- cCAUCgggcgGGUGACCGGC----UCCGGCg -3'
miRNA:   3'- aGUGGa----CUAUUGGCCGcuauGGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 22640 0.66 0.684626
Target:  5'- -aGCCUGAcacucUGACCGGUGuuuCCguGUa -3'
miRNA:   3'- agUGGACU-----AUUGGCCGCuauGGguCG- -5'
21040 3' -52.6 NC_004745.1 + 27333 0.66 0.673052
Target:  5'- aUCACCUGuAUGgucauguuGCUGGCGcUGCaCgAGCu -3'
miRNA:   3'- -AGUGGAC-UAU--------UGGCCGCuAUG-GgUCG- -5'
21040 3' -52.6 NC_004745.1 + 19899 0.66 0.673052
Target:  5'- -gGCCaguuuUGAgaaaAACCGGCucGGUacuGCCCAGCa -3'
miRNA:   3'- agUGG-----ACUa---UUGGCCG--CUA---UGGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 4313 0.67 0.649785
Target:  5'- cCACCgacaccGCCGGUGGcACCgAGCg -3'
miRNA:   3'- aGUGGacuau-UGGCCGCUaUGGgUCG- -5'
21040 3' -52.6 NC_004745.1 + 7604 0.67 0.619443
Target:  5'- cCACCUGGgcgauuCUGGCGAugguuaucuguguggUugCCGGUg -3'
miRNA:   3'- aGUGGACUauu---GGCCGCU---------------AugGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 845 0.68 0.603127
Target:  5'- cCAgUCUGAUGaccuuACCGGUGGUGCUgUAGCg -3'
miRNA:   3'- aGU-GGACUAU-----UGGCCGCUAUGG-GUCG- -5'
21040 3' -52.6 NC_004745.1 + 20398 0.68 0.603127
Target:  5'- gCGCCUgcugccgcGAUAauggcauugauGCCGGUGAUAaCCGGCc -3'
miRNA:   3'- aGUGGA--------CUAU-----------UGGCCGCUAUgGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 14249 0.68 0.568385
Target:  5'- cCGCCaaGAUcACUGGauguucCGAUGCCCAGUg -3'
miRNA:   3'- aGUGGa-CUAuUGGCC------GCUAUGGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 1749 0.69 0.545498
Target:  5'- -uGCgUGGUAcuggcaccGCCGGUGGUGgCCGGUg -3'
miRNA:   3'- agUGgACUAU--------UGGCCGCUAUgGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 1685 0.69 0.534165
Target:  5'- cCACCggccaccACCGGCGGUGCC-AGUa -3'
miRNA:   3'- aGUGGacuau--UGGCCGCUAUGGgUCG- -5'
21040 3' -52.6 NC_004745.1 + 21057 0.69 0.534165
Target:  5'- gCAuCCUG-UAACUGGCGGUcaagcugugucCCCGGCg -3'
miRNA:   3'- aGU-GGACuAUUGGCCGCUAu----------GGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 5574 0.69 0.51956
Target:  5'- cCACCUccucGGUGAacauguaCGGCGGggugcggcgguguuUACCCGGCa -3'
miRNA:   3'- aGUGGA----CUAUUg------GCCGCU--------------AUGGGUCG- -5'
21040 3' -52.6 NC_004745.1 + 9671 0.7 0.478917
Target:  5'- -uGCCgggGAUuuauuCCGGCGAUaACCCcGCg -3'
miRNA:   3'- agUGGa--CUAuu---GGCCGCUA-UGGGuCG- -5'
21040 3' -52.6 NC_004745.1 + 4883 0.7 0.475689
Target:  5'- gCAUC-GGUAaccuGCCGGCGGUAcgcgucccguacuuCCCGGCg -3'
miRNA:   3'- aGUGGaCUAU----UGGCCGCUAU--------------GGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.