Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21057 | 5' | -43.2 | NC_004745.1 | + | 28473 | 1.19 | 0.002463 |
Target: 5'- cGCGCUGAUAUACAACGCAAAAUCACCa -3' miRNA: 3'- -CGCGACUAUAUGUUGCGUUUUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 17923 | 0.66 | 0.99664 |
Target: 5'- aGCaCUGGU-UGCAGCGUAAAGcUC-CCa -3' miRNA: 3'- -CGcGACUAuAUGUUGCGUUUU-AGuGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 11557 | 0.68 | 0.991821 |
Target: 5'- uCGCgGAUA-ACGGCGCGuuuuGUCGCUu -3' miRNA: 3'- cGCGaCUAUaUGUUGCGUuu--UAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 6855 | 0.69 | 0.982672 |
Target: 5'- uGCGCccGAUAaACAGaCGCGGGGugauggguUCACCa -3' miRNA: 3'- -CGCGa-CUAUaUGUU-GCGUUUU--------AGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 16970 | 0.7 | 0.963399 |
Target: 5'- uGCGCUGAUAUACccgAAgGCAu--UCAguuCCu -3' miRNA: 3'- -CGCGACUAUAUG---UUgCGUuuuAGU---GG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 5313 | 0.7 | 0.96257 |
Target: 5'- uGCGCUGGUcUGCGGCGagcuua-ACCa -3' miRNA: 3'- -CGCGACUAuAUGUUGCguuuuagUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 7263 | 0.66 | 0.997749 |
Target: 5'- aGCuGCUGAUA-GCGAC-CGGAGgccguggauuuuUCACCg -3' miRNA: 3'- -CG-CGACUAUaUGUUGcGUUUU------------AGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 21839 | 0.66 | 0.99664 |
Target: 5'- -aGCcGAUAUACAcCGuCAGGAcagCGCCa -3' miRNA: 3'- cgCGaCUAUAUGUuGC-GUUUUa--GUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 21503 | 0.7 | 0.970993 |
Target: 5'- aCGCgGGUGagcgACAGCGUAAAAUCAa- -3' miRNA: 3'- cGCGaCUAUa---UGUUGCGUUUUAGUgg -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 8297 | 0.71 | 0.938641 |
Target: 5'- gGCGCUGGUGcaacCGGCGCAcagcaucaggcAGGUCAgCa -3' miRNA: 3'- -CGCGACUAUau--GUUGCGU-----------UUUAGUgG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 6996 | 0.72 | 0.919589 |
Target: 5'- gGCGCUGA-----AugGCAAucucAAUCACCu -3' miRNA: 3'- -CGCGACUauaugUugCGUU----UUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 28602 | 0.72 | 0.926296 |
Target: 5'- cGCGCcGAgAUGCGGCGCGuAAAU-GCCg -3' miRNA: 3'- -CGCGaCUaUAUGUUGCGU-UUUAgUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 9748 | 0.68 | 0.991821 |
Target: 5'- cCGCcGAcgcagACGGCGCGGGguuAUCGCCg -3' miRNA: 3'- cGCGaCUaua--UGUUGCGUUU---UAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 18855 | 0.66 | 0.99664 |
Target: 5'- uGCGCUGGUcu----UGCGAAAUC-CCu -3' miRNA: 3'- -CGCGACUAuauguuGCGUUUUAGuGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 22568 | 0.68 | 0.986971 |
Target: 5'- cGUGCUGAUAUuu-ACaCGGAAaCACCg -3' miRNA: 3'- -CGCGACUAUAuguUGcGUUUUaGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 21636 | 0.68 | 0.984938 |
Target: 5'- aUGCUGAUGcuCGACaGCAGGgauAUUACCg -3' miRNA: 3'- cGCGACUAUauGUUG-CGUUU---UAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 19483 | 0.69 | 0.980159 |
Target: 5'- aCGCUGA-AUAUGGCGCuggcGAAcCGCCg -3' miRNA: 3'- cGCGACUaUAUGUUGCGu---UUUaGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 5635 | 0.69 | 0.980159 |
Target: 5'- uGC-CUGAUgaaGUGC-GCGCAaagcugcacaAAAUCACCg -3' miRNA: 3'- -CGcGACUA---UAUGuUGCGU----------UUUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 3393 | 0.74 | 0.833814 |
Target: 5'- gGCGCUGAaagGCAaauggGCGCuguuugcgAAAAUCACCc -3' miRNA: 3'- -CGCGACUauaUGU-----UGCG--------UUUUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 8009 | 0.71 | 0.949573 |
Target: 5'- uCGCUGG---ACAGgGCGAAuaacGUCGCCa -3' miRNA: 3'- cGCGACUauaUGUUgCGUUU----UAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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