Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21182 | 3' | -59.9 | NC_004778.3 | + | 47659 | 0.67 | 0.625221 |
Target: 5'- aCGcCGCcccgGCaGGCCGCGCaCCu-ACCGg -3' miRNA: 3'- aGC-GCGa---CGaCCGGCGUG-GGuuUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 95008 | 0.67 | 0.625221 |
Target: 5'- gCGCGCcgUGCgccgacgGGCagguGCGCCUGGACCa -3' miRNA: 3'- aGCGCG--ACGa------CCGg---CGUGGGUUUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 6710 | 0.67 | 0.61511 |
Target: 5'- cUUGCGCuuacggaaaUGCuccucuUGGCCGCGCgCAAACgCGa -3' miRNA: 3'- -AGCGCG---------ACG------ACCGGCGUGgGUUUG-GC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 49804 | 0.67 | 0.61511 |
Target: 5'- uUCGuCGUUGCUGGCCGCuuuuuguuUCCGuaaagcACUGg -3' miRNA: 3'- -AGC-GCGACGACCGGCGu-------GGGUu-----UGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 35714 | 0.67 | 0.61511 |
Target: 5'- gUCuaGCUGCggguugGGCCGCAC-CAAGUCGa -3' miRNA: 3'- -AGcgCGACGa-----CCGGCGUGgGUUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 41222 | 0.67 | 0.61511 |
Target: 5'- uUCGCGUuugacggGC-GGCCGCGCCgGcAACCc -3' miRNA: 3'- -AGCGCGa------CGaCCGGCGUGGgU-UUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 117890 | 0.67 | 0.604003 |
Target: 5'- aCGCGUUGUcggacuuUGGCauCACCgAAACCGa -3' miRNA: 3'- aGCGCGACG-------ACCGgcGUGGgUUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 121540 | 0.68 | 0.584881 |
Target: 5'- -aGCGCcGCcGGCCaGCaacacGCCCAcGCCGg -3' miRNA: 3'- agCGCGaCGaCCGG-CG-----UGGGUuUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 64811 | 0.68 | 0.584881 |
Target: 5'- aCGCGC-GCUGcGCCGauuuGCCCAAgggaacggGCCa -3' miRNA: 3'- aGCGCGaCGAC-CGGCg---UGGGUU--------UGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 80057 | 0.68 | 0.584881 |
Target: 5'- aCGCgGC-GCUGGCCGgC-CCCAAcuACCu -3' miRNA: 3'- aGCG-CGaCGACCGGC-GuGGGUU--UGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 102705 | 0.68 | 0.584881 |
Target: 5'- cCGCGCUGCaGGCCGCGgCgUuuGCgGc -3' miRNA: 3'- aGCGCGACGaCCGGCGU-GgGuuUGgC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 46217 | 0.68 | 0.574862 |
Target: 5'- cCGUGCaGCUGGCCGcCGCUgAAAUg- -3' miRNA: 3'- aGCGCGaCGACCGGC-GUGGgUUUGgc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 117678 | 0.68 | 0.574862 |
Target: 5'- gCGUGCUGCUG--UGCGCCgUGGACCGg -3' miRNA: 3'- aGCGCGACGACcgGCGUGG-GUUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 8036 | 0.68 | 0.564883 |
Target: 5'- -gGgGCUGCUaGCgUGCACCCAucGCCGc -3' miRNA: 3'- agCgCGACGAcCG-GCGUGGGUu-UGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 34077 | 0.68 | 0.564883 |
Target: 5'- cCGCGUccgccagcucguUGUggucgGGCCGCGCCCAAAa-- -3' miRNA: 3'- aGCGCG------------ACGa----CCGGCGUGGGUUUggc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 2392 | 0.68 | 0.55495 |
Target: 5'- cCGCGC-GgUGGCCgacgugcccGCGCCCGacGACCa -3' miRNA: 3'- aGCGCGaCgACCGG---------CGUGGGU--UUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 23969 | 0.68 | 0.55495 |
Target: 5'- cCGCGCUuccguccgaggcGCgggaucGGCCGCugCguGACCGu -3' miRNA: 3'- aGCGCGA------------CGa-----CCGGCGugGguUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 7904 | 0.68 | 0.55495 |
Target: 5'- gCGUGUUGCUGGCCgGCGgCgCuuACCu -3' miRNA: 3'- aGCGCGACGACCGG-CGUgG-GuuUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 30720 | 0.68 | 0.545069 |
Target: 5'- gCaCGCUGC-GGCCGCGgCCGGcuGCCa -3' miRNA: 3'- aGcGCGACGaCCGGCGUgGGUU--UGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 15042 | 0.68 | 0.545069 |
Target: 5'- cCGCgGCUGCUgacaagccGGCCGUugCUAcgcaagGGCCGg -3' miRNA: 3'- aGCG-CGACGA--------CCGGCGugGGU------UUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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