miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 3' -59.9 NC_004778.3 + 31235 0.67 0.635337
Target:  5'- -gGCGUUGCUGuccguggcGCgCGCACCuCGcGCCGa -3'
miRNA:   3'- agCGCGACGAC--------CG-GCGUGG-GUuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 32270 0.69 0.515792
Target:  5'- cCGCGCacGCUGGCCggcgGCGCCguguCGGGCUGg -3'
miRNA:   3'- aGCGCGa-CGACCGG----CGUGG----GUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 33382 0.67 0.655554
Target:  5'- aCGCGCcGUcuuUGGaCGCGCCCA-ACCu -3'
miRNA:   3'- aGCGCGaCG---ACCgGCGUGGGUuUGGc -5'
21182 3' -59.9 NC_004778.3 + 34077 0.68 0.564883
Target:  5'- cCGCGUccgccagcucguUGUggucgGGCCGCGCCCAAAa-- -3'
miRNA:   3'- aGCGCG------------ACGa----CCGGCGUGGGUUUggc -5'
21182 3' -59.9 NC_004778.3 + 35714 0.67 0.61511
Target:  5'- gUCuaGCUGCggguugGGCCGCAC-CAAGUCGa -3'
miRNA:   3'- -AGcgCGACGa-----CCGGCGUGgGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 41222 0.67 0.61511
Target:  5'- uUCGCGUuugacggGC-GGCCGCGCCgGcAACCc -3'
miRNA:   3'- -AGCGCGa------CGaCCGGCGUGGgU-UUGGc -5'
21182 3' -59.9 NC_004778.3 + 44366 0.66 0.695701
Target:  5'- gCGCGUuaauuUGUUGcGCUGCAUuuGAGCCa -3'
miRNA:   3'- aGCGCG-----ACGAC-CGGCGUGggUUUGGc -5'
21182 3' -59.9 NC_004778.3 + 44933 0.69 0.49663
Target:  5'- -gGCGCUGCUGuaccGCgCGCGCCCGAu--- -3'
miRNA:   3'- agCGCGACGAC----CG-GCGUGGGUUuggc -5'
21182 3' -59.9 NC_004778.3 + 45601 0.7 0.468511
Target:  5'- gCGCGCcuucUGCauaGCCGCGCCCucgucGCCGg -3'
miRNA:   3'- aGCGCG----ACGac-CGGCGUGGGuu---UGGC- -5'
21182 3' -59.9 NC_004778.3 + 46217 0.68 0.574862
Target:  5'- cCGUGCaGCUGGCCGcCGCUgAAAUg- -3'
miRNA:   3'- aGCGCGaCGACCGGC-GUGGgUUUGgc -5'
21182 3' -59.9 NC_004778.3 + 47659 0.67 0.625221
Target:  5'- aCGcCGCcccgGCaGGCCGCGCaCCu-ACCGg -3'
miRNA:   3'- aGC-GCGa---CGaCCGGCGUG-GGuuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 48859 0.66 0.665639
Target:  5'- aUUGCGCaGUUGGUCGCGCac-GGCCu -3'
miRNA:   3'- -AGCGCGaCGACCGGCGUGgguUUGGc -5'
21182 3' -59.9 NC_004778.3 + 49804 0.67 0.61511
Target:  5'- uUCGuCGUUGCUGGCCGCuuuuuguuUCCGuaaagcACUGg -3'
miRNA:   3'- -AGC-GCGACGACCGGCGu-------GGGUu-----UGGC- -5'
21182 3' -59.9 NC_004778.3 + 56390 0.7 0.477796
Target:  5'- uUUGCGCgGCgGGUCGCugCCGcAAUCGu -3'
miRNA:   3'- -AGCGCGaCGaCCGGCGugGGU-UUGGC- -5'
21182 3' -59.9 NC_004778.3 + 56919 0.74 0.278694
Target:  5'- cCGCGCUGCUGG-CGCAaaCuGGCCGa -3'
miRNA:   3'- aGCGCGACGACCgGCGUggGuUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 57957 0.67 0.655554
Target:  5'- cUGCGCUgcGCUGGCUGCA---AAGCCa -3'
miRNA:   3'- aGCGCGA--CGACCGGCGUgggUUUGGc -5'
21182 3' -59.9 NC_004778.3 + 61663 0.66 0.70563
Target:  5'- gCGCGCaUGCUGggccaGCCGCcgAUUCAGAUCGc -3'
miRNA:   3'- aGCGCG-ACGAC-----CGGCG--UGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 63196 0.66 0.665639
Target:  5'- gUGCGCgGCUGGCU--GCCCGGAUg- -3'
miRNA:   3'- aGCGCGaCGACCGGcgUGGGUUUGgc -5'
21182 3' -59.9 NC_004778.3 + 64811 0.68 0.584881
Target:  5'- aCGCGC-GCUGcGCCGauuuGCCCAAgggaacggGCCa -3'
miRNA:   3'- aGCGCGaCGAC-CGGCg---UGGGUU--------UGGc -5'
21182 3' -59.9 NC_004778.3 + 65930 0.67 0.635337
Target:  5'- gCGCGUUGUgGcGCCGCcgcagcaugaGCCCGAAuCCGc -3'
miRNA:   3'- aGCGCGACGaC-CGGCG----------UGGGUUU-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.