miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 3' -59.9 NC_004778.3 + 2392 0.68 0.55495
Target:  5'- cCGCGC-GgUGGCCgacgugcccGCGCCCGacGACCa -3'
miRNA:   3'- aGCGCGaCgACCGG---------CGUGGGU--UUGGc -5'
21182 3' -59.9 NC_004778.3 + 4975 0.66 0.691715
Target:  5'- aUCGCGCcuauaaauaaGGCCGCA-CCGAACUGg -3'
miRNA:   3'- -AGCGCGacga------CCGGCGUgGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 6021 0.73 0.32702
Target:  5'- gCGCGUUGCUGuuaGCCGCGCCauuGACUc -3'
miRNA:   3'- aGCGCGACGAC---CGGCGUGGgu-UUGGc -5'
21182 3' -59.9 NC_004778.3 + 6402 0.74 0.265973
Target:  5'- aCGCGUUGCUGGCC-CGCCguAcgcuuuACCGg -3'
miRNA:   3'- aGCGCGACGACCGGcGUGGguU------UGGC- -5'
21182 3' -59.9 NC_004778.3 + 6710 0.67 0.61511
Target:  5'- cUUGCGCuuacggaaaUGCuccucuUGGCCGCGCgCAAACgCGa -3'
miRNA:   3'- -AGCGCG---------ACG------ACCGGCGUGgGUUUG-GC- -5'
21182 3' -59.9 NC_004778.3 + 7904 0.68 0.55495
Target:  5'- gCGUGUUGCUGGCCgGCGgCgCuuACCu -3'
miRNA:   3'- aGCGCGACGACCGG-CGUgG-GuuUGGc -5'
21182 3' -59.9 NC_004778.3 + 8036 0.68 0.564883
Target:  5'- -gGgGCUGCUaGCgUGCACCCAucGCCGc -3'
miRNA:   3'- agCgCGACGAcCG-GCGUGGGUu-UGGC- -5'
21182 3' -59.9 NC_004778.3 + 10663 0.75 0.219755
Target:  5'- gCGCGCcgGCcGcGCCGCGCCCGAAgCGu -3'
miRNA:   3'- aGCGCGa-CGaC-CGGCGUGGGUUUgGC- -5'
21182 3' -59.9 NC_004778.3 + 10695 0.66 0.665639
Target:  5'- aCGUGUugagugUGCgccGCCGCGCCgAGGCCa -3'
miRNA:   3'- aGCGCG------ACGac-CGGCGUGGgUUUGGc -5'
21182 3' -59.9 NC_004778.3 + 11019 0.69 0.535245
Target:  5'- gCGCGCcgUGCaacCCGCACCCAAACa- -3'
miRNA:   3'- aGCGCG--ACGaccGGCGUGGGUUUGgc -5'
21182 3' -59.9 NC_004778.3 + 11977 0.67 0.642417
Target:  5'- cCGCGaccaucgucaacgugGCaGGCCGCugCCGcGCCGc -3'
miRNA:   3'- aGCGCga-------------CGaCCGGCGugGGUuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 15042 0.68 0.545069
Target:  5'- cCGCgGCUGCUgacaagccGGCCGUugCUAcgcaagGGCCGg -3'
miRNA:   3'- aGCG-CGACGA--------CCGGCGugGGU------UUGGC- -5'
21182 3' -59.9 NC_004778.3 + 15723 0.71 0.388682
Target:  5'- aUGCGCcaauugauaaaagUGUUGGCCGCccgcaACCUAAGCUGg -3'
miRNA:   3'- aGCGCG-------------ACGACCGGCG-----UGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 17098 0.66 0.695701
Target:  5'- cCGUGUUGCUGuGCgcgcggCGCGCCU--ACCGu -3'
miRNA:   3'- aGCGCGACGAC-CG------GCGUGGGuuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 17468 0.7 0.432341
Target:  5'- cUCGCGCaGcCUGGCCauuGUGCCUuuAGACCGa -3'
miRNA:   3'- -AGCGCGaC-GACCGG---CGUGGG--UUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 20915 0.66 0.715498
Target:  5'- uUUGCGCacauUGCgauaauGCCGCAgCCCA-GCCGg -3'
miRNA:   3'- -AGCGCG----ACGac----CGGCGU-GGGUuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 23969 0.68 0.55495
Target:  5'- cCGCGCUuccguccgaggcGCgggaucGGCCGCugCguGACCGu -3'
miRNA:   3'- aGCGCGA------------CGa-----CCGGCGugGguUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 27796 0.67 0.642417
Target:  5'- cCGCGCUGCaccgcaugcacgGGCCGCuugucgcGCUCGGGgCGg -3'
miRNA:   3'- aGCGCGACGa-----------CCGGCG-------UGGGUUUgGC- -5'
21182 3' -59.9 NC_004778.3 + 30423 0.77 0.167543
Target:  5'- aCGCGUUGCcgGGCguugcgGCACCCGGACCGc -3'
miRNA:   3'- aGCGCGACGa-CCGg-----CGUGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 30720 0.68 0.545069
Target:  5'- gCaCGCUGC-GGCCGCGgCCGGcuGCCa -3'
miRNA:   3'- aGcGCGACGaCCGGCGUgGGUU--UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.