miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 3' -59.9 NC_004778.3 + 64811 0.68 0.584881
Target:  5'- aCGCGC-GCUGcGCCGauuuGCCCAAgggaacggGCCa -3'
miRNA:   3'- aGCGCGaCGAC-CGGCg---UGGGUU--------UGGc -5'
21182 3' -59.9 NC_004778.3 + 45601 0.7 0.468511
Target:  5'- gCGCGCcuucUGCauaGCCGCGCCCucgucGCCGg -3'
miRNA:   3'- aGCGCG----ACGac-CGGCGUGGGuu---UGGC- -5'
21182 3' -59.9 NC_004778.3 + 56390 0.7 0.477796
Target:  5'- uUUGCGCgGCgGGUCGCugCCGcAAUCGu -3'
miRNA:   3'- -AGCGCGaCGaCCGGCGugGGU-UUGGC- -5'
21182 3' -59.9 NC_004778.3 + 44933 0.69 0.49663
Target:  5'- -gGCGCUGCUGuaccGCgCGCGCCCGAu--- -3'
miRNA:   3'- agCGCGACGAC----CG-GCGUGGGUUuggc -5'
21182 3' -59.9 NC_004778.3 + 32270 0.69 0.515792
Target:  5'- cCGCGCacGCUGGCCggcgGCGCCguguCGGGCUGg -3'
miRNA:   3'- aGCGCGa-CGACCGG----CGUGG----GUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 2392 0.68 0.55495
Target:  5'- cCGCGC-GgUGGCCgacgugcccGCGCCCGacGACCa -3'
miRNA:   3'- aGCGCGaCgACCGG---------CGUGGGU--UUGGc -5'
21182 3' -59.9 NC_004778.3 + 8036 0.68 0.564883
Target:  5'- -gGgGCUGCUaGCgUGCACCCAucGCCGc -3'
miRNA:   3'- agCgCGACGAcCG-GCGUGGGUu-UGGC- -5'
21182 3' -59.9 NC_004778.3 + 117678 0.68 0.574862
Target:  5'- gCGUGCUGCUG--UGCGCCgUGGACCGg -3'
miRNA:   3'- aGCGCGACGACcgGCGUGG-GUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 121540 0.68 0.584881
Target:  5'- -aGCGCcGCcGGCCaGCaacacGCCCAcGCCGg -3'
miRNA:   3'- agCGCGaCGaCCGG-CG-----UGGGUuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 126896 0.7 0.450226
Target:  5'- gUUGUaCUGCUGGCgGCGCCgCAuGCUGg -3'
miRNA:   3'- -AGCGcGACGACCGgCGUGG-GUuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 110888 0.7 0.441232
Target:  5'- -aGCGaaCUGCUGGCCaGCGCCUGGcCCa -3'
miRNA:   3'- agCGC--GACGACCGG-CGUGGGUUuGGc -5'
21182 3' -59.9 NC_004778.3 + 94742 0.7 0.432341
Target:  5'- gCGUcugGCUGCUGGCCGagACCgAAACgGg -3'
miRNA:   3'- aGCG---CGACGACCGGCg-UGGgUUUGgC- -5'
21182 3' -59.9 NC_004778.3 + 6402 0.74 0.265973
Target:  5'- aCGCGUUGCUGGCC-CGCCguAcgcuuuACCGg -3'
miRNA:   3'- aGCGCGACGACCGGcGUGGguU------UGGC- -5'
21182 3' -59.9 NC_004778.3 + 56919 0.74 0.278694
Target:  5'- cCGCGCUGCUGG-CGCAaaCuGGCCGa -3'
miRNA:   3'- aGCGCGACGACCgGCGUggGuUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 69960 0.73 0.319751
Target:  5'- gCGCGCUGCUaGGUaccgaaugcgCGCGCCC--GCCGc -3'
miRNA:   3'- aGCGCGACGA-CCG----------GCGUGGGuuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 6021 0.73 0.32702
Target:  5'- gCGCGUUGCUGuuaGCCGCGCCauuGACUc -3'
miRNA:   3'- aGCGCGACGAC---CGGCGUGGgu-UUGGc -5'
21182 3' -59.9 NC_004778.3 + 112482 0.72 0.33441
Target:  5'- cUCGCGCcaGC-GGCCGaugaACUCGAGCCGg -3'
miRNA:   3'- -AGCGCGa-CGaCCGGCg---UGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 120962 0.71 0.381283
Target:  5'- -gGCGggGCgcgGGCCGCGCCCGcuGCCc -3'
miRNA:   3'- agCGCgaCGa--CCGGCGUGGGUu-UGGc -5'
21182 3' -59.9 NC_004778.3 + 15723 0.71 0.388682
Target:  5'- aUGCGCcaauugauaaaagUGUUGGCCGCccgcaACCUAAGCUGg -3'
miRNA:   3'- aGCGCG-------------ACGACCGGCG-----UGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 17468 0.7 0.432341
Target:  5'- cUCGCGCaGcCUGGCCauuGUGCCUuuAGACCGa -3'
miRNA:   3'- -AGCGCGaC-GACCGG---CGUGGG--UUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.