miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 3' -59.9 NC_004778.3 + 96532 0.66 0.715498
Target:  5'- uUCGCGuCUGCgGGCgUGCACgC--GCCGu -3'
miRNA:   3'- -AGCGC-GACGaCCG-GCGUGgGuuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 15042 0.68 0.545069
Target:  5'- cCGCgGCUGCUgacaagccGGCCGUugCUAcgcaagGGCCGg -3'
miRNA:   3'- aGCG-CGACGA--------CCGGCGugGGU------UUGGC- -5'
21182 3' -59.9 NC_004778.3 + 96002 0.69 0.506172
Target:  5'- cCGCGCUuuucGCgccGCCGCAUCCAuucuauGCCGc -3'
miRNA:   3'- aGCGCGA----CGac-CGGCGUGGGUu-----UGGC- -5'
21182 3' -59.9 NC_004778.3 + 127763 1.09 0.001014
Target:  5'- cUCGCGCUGCUGGCCGCACCCAAACCGa -3'
miRNA:   3'- -AGCGCGACGACCGGCGUGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 10695 0.66 0.665639
Target:  5'- aCGUGUugagugUGCgccGCCGCGCCgAGGCCa -3'
miRNA:   3'- aGCGCG------ACGac-CGGCGUGGgUUUGGc -5'
21182 3' -59.9 NC_004778.3 + 95034 0.67 0.655554
Target:  5'- cCGCGCUGCcGGa-GCAgCCcGGCCa -3'
miRNA:   3'- aGCGCGACGaCCggCGUgGGuUUGGc -5'
21182 3' -59.9 NC_004778.3 + 47659 0.67 0.625221
Target:  5'- aCGcCGCcccgGCaGGCCGCGCaCCu-ACCGg -3'
miRNA:   3'- aGC-GCGa---CGaCCGGCGUG-GGuuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 41222 0.67 0.61511
Target:  5'- uUCGCGUuugacggGC-GGCCGCGCCgGcAACCc -3'
miRNA:   3'- -AGCGCGa------CGaCCGGCGUGGgU-UUGGc -5'
21182 3' -59.9 NC_004778.3 + 80057 0.68 0.584881
Target:  5'- aCGCgGC-GCUGGCCGgC-CCCAAcuACCu -3'
miRNA:   3'- aGCG-CGaCGACCGGC-GuGGGUU--UGGc -5'
21182 3' -59.9 NC_004778.3 + 30720 0.68 0.545069
Target:  5'- gCaCGCUGC-GGCCGCGgCCGGcuGCCa -3'
miRNA:   3'- aGcGCGACGaCCGGCGUgGGUU--UGGc -5'
21182 3' -59.9 NC_004778.3 + 34077 0.68 0.564883
Target:  5'- cCGCGUccgccagcucguUGUggucgGGCCGCGCCCAAAa-- -3'
miRNA:   3'- aGCGCG------------ACGa----CCGGCGUGGGUUUggc -5'
21182 3' -59.9 NC_004778.3 + 102705 0.68 0.584881
Target:  5'- cCGCGCUGCaGGCCGCGgCgUuuGCgGc -3'
miRNA:   3'- aGCGCGACGaCCGGCGU-GgGuuUGgC- -5'
21182 3' -59.9 NC_004778.3 + 69478 0.66 0.715498
Target:  5'- -gGCGC-GCUGGCCGUguuuaGCCUGGugUa -3'
miRNA:   3'- agCGCGaCGACCGGCG-----UGGGUUugGc -5'
21182 3' -59.9 NC_004778.3 + 23969 0.68 0.55495
Target:  5'- cCGCGCUuccguccgaggcGCgggaucGGCCGCugCguGACCGu -3'
miRNA:   3'- aGCGCGA------------CGa-----CCGGCGugGguUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 44366 0.66 0.695701
Target:  5'- gCGCGUuaauuUGUUGcGCUGCAUuuGAGCCa -3'
miRNA:   3'- aGCGCG-----ACGAC-CGGCGUGggUUUGGc -5'
21182 3' -59.9 NC_004778.3 + 35714 0.67 0.61511
Target:  5'- gUCuaGCUGCggguugGGCCGCAC-CAAGUCGa -3'
miRNA:   3'- -AGcgCGACGa-----CCGGCGUGgGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 7904 0.68 0.55495
Target:  5'- gCGUGUUGCUGGCCgGCGgCgCuuACCu -3'
miRNA:   3'- aGCGCGACGACCGG-CGUgG-GuuUGGc -5'
21182 3' -59.9 NC_004778.3 + 11019 0.69 0.535245
Target:  5'- gCGCGCcgUGCaacCCGCACCCAAACa- -3'
miRNA:   3'- aGCGCG--ACGaccGGCGUGGGUUUGgc -5'
21182 3' -59.9 NC_004778.3 + 4975 0.66 0.691715
Target:  5'- aUCGCGCcuauaaauaaGGCCGCA-CCGAACUGg -3'
miRNA:   3'- -AGCGCGacga------CCGGCGUgGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 65930 0.67 0.635337
Target:  5'- gCGCGUUGUgGcGCCGCcgcagcaugaGCCCGAAuCCGc -3'
miRNA:   3'- aGCGCGACGaC-CGGCG----------UGGGUUU-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.