miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 3' -59.9 NC_004778.3 + 127763 1.09 0.001014
Target:  5'- cUCGCGCUGCUGGCCGCACCCAAACCGa -3'
miRNA:   3'- -AGCGCGACGACCGGCGUGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 128456 0.78 0.1477
Target:  5'- aCGCGUUGgaGGCCGCugCUgcGCCGa -3'
miRNA:   3'- aGCGCGACgaCCGGCGugGGuuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 30423 0.77 0.167543
Target:  5'- aCGCGUUGCcgGGCguugcgGCACCCGGACCGc -3'
miRNA:   3'- aGCGCGACGa-CCGg-----CGUGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 10663 0.75 0.219755
Target:  5'- gCGCGCcgGCcGcGCCGCGCCCGAAgCGu -3'
miRNA:   3'- aGCGCGa-CGaC-CGGCGUGGGUUUgGC- -5'
21182 3' -59.9 NC_004778.3 + 94774 0.74 0.253126
Target:  5'- uUCGCGCUGCUGugcaguuGCCuGCGgCCCGGGCuCGg -3'
miRNA:   3'- -AGCGCGACGAC-------CGG-CGU-GGGUUUG-GC- -5'
21182 3' -59.9 NC_004778.3 + 6402 0.74 0.265973
Target:  5'- aCGCGUUGCUGGCC-CGCCguAcgcuuuACCGg -3'
miRNA:   3'- aGCGCGACGACCGGcGUGGguU------UGGC- -5'
21182 3' -59.9 NC_004778.3 + 56919 0.74 0.278694
Target:  5'- cCGCGCUGCUGG-CGCAaaCuGGCCGa -3'
miRNA:   3'- aGCGCGACGACCgGCGUggGuUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 67811 0.73 0.30558
Target:  5'- gCGCGC-GCUGGCUGCGCggcgCCAAACg- -3'
miRNA:   3'- aGCGCGaCGACCGGCGUG----GGUUUGgc -5'
21182 3' -59.9 NC_004778.3 + 69960 0.73 0.319751
Target:  5'- gCGCGCUGCUaGGUaccgaaugcgCGCGCCC--GCCGc -3'
miRNA:   3'- aGCGCGACGA-CCG----------GCGUGGGuuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 6021 0.73 0.32702
Target:  5'- gCGCGUUGCUGuuaGCCGCGCCauuGACUc -3'
miRNA:   3'- aGCGCGACGAC---CGGCGUGGgu-UUGGc -5'
21182 3' -59.9 NC_004778.3 + 112482 0.72 0.33441
Target:  5'- cUCGCGCcaGC-GGCCGaugaACUCGAGCCGg -3'
miRNA:   3'- -AGCGCGa-CGaCCGGCg---UGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 127559 0.72 0.341922
Target:  5'- cUGCaGCgGCUGGCCaGCACUCGAGCUu -3'
miRNA:   3'- aGCG-CGaCGACCGG-CGUGGGUUUGGc -5'
21182 3' -59.9 NC_004778.3 + 123202 0.72 0.373173
Target:  5'- cCGCGCUGCaaaaGGCCGaAUCCAAGCa- -3'
miRNA:   3'- aGCGCGACGa---CCGGCgUGGGUUUGgc -5'
21182 3' -59.9 NC_004778.3 + 120958 0.72 0.373173
Target:  5'- cCGCGCUuGC-GGaaCGCGCCUGAACCGg -3'
miRNA:   3'- aGCGCGA-CGaCCg-GCGUGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 120962 0.71 0.381283
Target:  5'- -gGCGggGCgcgGGCCGCGCCCGcuGCCc -3'
miRNA:   3'- agCGCgaCGa--CCGGCGUGGGUu-UGGc -5'
21182 3' -59.9 NC_004778.3 + 15723 0.71 0.388682
Target:  5'- aUGCGCcaauugauaaaagUGUUGGCCGCccgcaACCUAAGCUGg -3'
miRNA:   3'- aGCGCG-------------ACGACCGGCG-----UGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 94742 0.7 0.432341
Target:  5'- gCGUcugGCUGCUGGCCGagACCgAAACgGg -3'
miRNA:   3'- aGCG---CGACGACCGGCg-UGGgUUUGgC- -5'
21182 3' -59.9 NC_004778.3 + 17468 0.7 0.432341
Target:  5'- cUCGCGCaGcCUGGCCauuGUGCCUuuAGACCGa -3'
miRNA:   3'- -AGCGCGaC-GACCGG---CGUGGG--UUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 110888 0.7 0.441232
Target:  5'- -aGCGaaCUGCUGGCCaGCGCCUGGcCCa -3'
miRNA:   3'- agCGC--GACGACCGG-CGUGGGUUuGGc -5'
21182 3' -59.9 NC_004778.3 + 126896 0.7 0.450226
Target:  5'- gUUGUaCUGCUGGCgGCGCCgCAuGCUGg -3'
miRNA:   3'- -AGCGcGACGACCGgCGUGG-GUuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.