Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21182 | 3' | -59.9 | NC_004778.3 | + | 82053 | 0.7 | 0.459321 |
Target: 5'- gCGCGCgUGCgacacGUCGCGCCCAAaauaacGCCGc -3' miRNA: 3'- aGCGCG-ACGac---CGGCGUGGGUU------UGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 110321 | 0.7 | 0.459321 |
Target: 5'- -aGCGCcGCUcG-CGCGCCCGAACCa -3' miRNA: 3'- agCGCGaCGAcCgGCGUGGGUUUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 45601 | 0.7 | 0.468511 |
Target: 5'- gCGCGCcuucUGCauaGCCGCGCCCucgucGCCGg -3' miRNA: 3'- aGCGCG----ACGac-CGGCGUGGGuu---UGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 56390 | 0.7 | 0.477796 |
Target: 5'- uUUGCGCgGCgGGUCGCugCCGcAAUCGu -3' miRNA: 3'- -AGCGCGaCGaCCGGCGugGGU-UUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 44933 | 0.69 | 0.49663 |
Target: 5'- -gGCGCUGCUGuaccGCgCGCGCCCGAu--- -3' miRNA: 3'- agCGCGACGAC----CG-GCGUGGGUUuggc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 96002 | 0.69 | 0.506172 |
Target: 5'- cCGCGCUuuucGCgccGCCGCAUCCAuucuauGCCGc -3' miRNA: 3'- aGCGCGA----CGac-CGGCGUGGGUu-----UGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 32270 | 0.69 | 0.515792 |
Target: 5'- cCGCGCacGCUGGCCggcgGCGCCguguCGGGCUGg -3' miRNA: 3'- aGCGCGa-CGACCGG----CGUGG----GUUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 11019 | 0.69 | 0.535245 |
Target: 5'- gCGCGCcgUGCaacCCGCACCCAAACa- -3' miRNA: 3'- aGCGCG--ACGaccGGCGUGGGUUUGgc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 15042 | 0.68 | 0.545069 |
Target: 5'- cCGCgGCUGCUgacaagccGGCCGUugCUAcgcaagGGCCGg -3' miRNA: 3'- aGCG-CGACGA--------CCGGCGugGGU------UUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 30720 | 0.68 | 0.545069 |
Target: 5'- gCaCGCUGC-GGCCGCGgCCGGcuGCCa -3' miRNA: 3'- aGcGCGACGaCCGGCGUgGGUU--UGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 2392 | 0.68 | 0.55495 |
Target: 5'- cCGCGC-GgUGGCCgacgugcccGCGCCCGacGACCa -3' miRNA: 3'- aGCGCGaCgACCGG---------CGUGGGU--UUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 7904 | 0.68 | 0.55495 |
Target: 5'- gCGUGUUGCUGGCCgGCGgCgCuuACCu -3' miRNA: 3'- aGCGCGACGACCGG-CGUgG-GuuUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 23969 | 0.68 | 0.55495 |
Target: 5'- cCGCGCUuccguccgaggcGCgggaucGGCCGCugCguGACCGu -3' miRNA: 3'- aGCGCGA------------CGa-----CCGGCGugGguUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 8036 | 0.68 | 0.564883 |
Target: 5'- -gGgGCUGCUaGCgUGCACCCAucGCCGc -3' miRNA: 3'- agCgCGACGAcCG-GCGUGGGUu-UGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 34077 | 0.68 | 0.564883 |
Target: 5'- cCGCGUccgccagcucguUGUggucgGGCCGCGCCCAAAa-- -3' miRNA: 3'- aGCGCG------------ACGa----CCGGCGUGGGUUUggc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 46217 | 0.68 | 0.574862 |
Target: 5'- cCGUGCaGCUGGCCGcCGCUgAAAUg- -3' miRNA: 3'- aGCGCGaCGACCGGC-GUGGgUUUGgc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 117678 | 0.68 | 0.574862 |
Target: 5'- gCGUGCUGCUG--UGCGCCgUGGACCGg -3' miRNA: 3'- aGCGCGACGACcgGCGUGG-GUUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 80057 | 0.68 | 0.584881 |
Target: 5'- aCGCgGC-GCUGGCCGgC-CCCAAcuACCu -3' miRNA: 3'- aGCG-CGaCGACCGGC-GuGGGUU--UGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 64811 | 0.68 | 0.584881 |
Target: 5'- aCGCGC-GCUGcGCCGauuuGCCCAAgggaacggGCCa -3' miRNA: 3'- aGCGCGaCGAC-CGGCg---UGGGUU--------UGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 121540 | 0.68 | 0.584881 |
Target: 5'- -aGCGCcGCcGGCCaGCaacacGCCCAcGCCGg -3' miRNA: 3'- agCGCGaCGaCCGG-CG-----UGGGUuUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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