Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21182 | 3' | -59.9 | NC_004778.3 | + | 128456 | 0.78 | 0.1477 |
Target: 5'- aCGCGUUGgaGGCCGCugCUgcGCCGa -3' miRNA: 3'- aGCGCGACgaCCGGCGugGGuuUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 127763 | 1.09 | 0.001014 |
Target: 5'- cUCGCGCUGCUGGCCGCACCCAAACCGa -3' miRNA: 3'- -AGCGCGACGACCGGCGUGGGUUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 127559 | 0.72 | 0.341922 |
Target: 5'- cUGCaGCgGCUGGCCaGCACUCGAGCUu -3' miRNA: 3'- aGCG-CGaCGACCGG-CGUGGGUUUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 126896 | 0.7 | 0.450226 |
Target: 5'- gUUGUaCUGCUGGCgGCGCCgCAuGCUGg -3' miRNA: 3'- -AGCGcGACGACCGgCGUGG-GUuUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 123202 | 0.72 | 0.373173 |
Target: 5'- cCGCGCUGCaaaaGGCCGaAUCCAAGCa- -3' miRNA: 3'- aGCGCGACGa---CCGGCgUGGGUUUGgc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 121540 | 0.68 | 0.584881 |
Target: 5'- -aGCGCcGCcGGCCaGCaacacGCCCAcGCCGg -3' miRNA: 3'- agCGCGaCGaCCGG-CG-----UGGGUuUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 120962 | 0.71 | 0.381283 |
Target: 5'- -gGCGggGCgcgGGCCGCGCCCGcuGCCc -3' miRNA: 3'- agCGCgaCGa--CCGGCGUGGGUu-UGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 120958 | 0.72 | 0.373173 |
Target: 5'- cCGCGCUuGC-GGaaCGCGCCUGAACCGg -3' miRNA: 3'- aGCGCGA-CGaCCg-GCGUGGGUUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 117890 | 0.67 | 0.604003 |
Target: 5'- aCGCGUUGUcggacuuUGGCauCACCgAAACCGa -3' miRNA: 3'- aGCGCGACG-------ACCGgcGUGGgUUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 117678 | 0.68 | 0.574862 |
Target: 5'- gCGUGCUGCUG--UGCGCCgUGGACCGg -3' miRNA: 3'- aGCGCGACGACcgGCGUGG-GUUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 112482 | 0.72 | 0.33441 |
Target: 5'- cUCGCGCcaGC-GGCCGaugaACUCGAGCCGg -3' miRNA: 3'- -AGCGCGa-CGaCCGGCg---UGGGUUUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 110888 | 0.7 | 0.441232 |
Target: 5'- -aGCGaaCUGCUGGCCaGCGCCUGGcCCa -3' miRNA: 3'- agCGC--GACGACCGG-CGUGGGUUuGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 110321 | 0.7 | 0.459321 |
Target: 5'- -aGCGCcGCUcG-CGCGCCCGAACCa -3' miRNA: 3'- agCGCGaCGAcCgGCGUGGGUUUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 102705 | 0.68 | 0.584881 |
Target: 5'- cCGCGCUGCaGGCCGCGgCgUuuGCgGc -3' miRNA: 3'- aGCGCGACGaCCGGCGU-GgGuuUGgC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 96532 | 0.66 | 0.715498 |
Target: 5'- uUCGCGuCUGCgGGCgUGCACgC--GCCGu -3' miRNA: 3'- -AGCGC-GACGaCCG-GCGUGgGuuUGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 96002 | 0.69 | 0.506172 |
Target: 5'- cCGCGCUuuucGCgccGCCGCAUCCAuucuauGCCGc -3' miRNA: 3'- aGCGCGA----CGac-CGGCGUGGGUu-----UGGC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 95034 | 0.67 | 0.655554 |
Target: 5'- cCGCGCUGCcGGa-GCAgCCcGGCCa -3' miRNA: 3'- aGCGCGACGaCCggCGUgGGuUUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 95008 | 0.67 | 0.625221 |
Target: 5'- gCGCGCcgUGCgccgacgGGCagguGCGCCUGGACCa -3' miRNA: 3'- aGCGCG--ACGa------CCGg---CGUGGGUUUGGc -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 94774 | 0.74 | 0.253126 |
Target: 5'- uUCGCGCUGCUGugcaguuGCCuGCGgCCCGGGCuCGg -3' miRNA: 3'- -AGCGCGACGAC-------CGG-CGU-GGGUUUG-GC- -5' |
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21182 | 3' | -59.9 | NC_004778.3 | + | 94742 | 0.7 | 0.432341 |
Target: 5'- gCGUcugGCUGCUGGCCGagACCgAAACgGg -3' miRNA: 3'- aGCG---CGACGACCGGCg-UGGgUUUGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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