Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21183 | 5' | -47.6 | NC_004778.3 | + | 112410 | 0.66 | 0.999671 |
Target: 5'- aGGCGGcacguaGUAAUCAucuucgcucgacgcgGGCC-GCAGCGu -3' miRNA: 3'- -CCGCCaa----UAUUAGU---------------UUGGaCGUCGCc -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 99930 | 0.66 | 0.999639 |
Target: 5'- cGGC-GUUGUAAUUAAAaaCUGguGCGa -3' miRNA: 3'- -CCGcCAAUAUUAGUUUg-GACguCGCc -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 12932 | 0.66 | 0.999639 |
Target: 5'- uGCGGUagcAGUC-AACCgcGUAGCGGu -3' miRNA: 3'- cCGCCAauaUUAGuUUGGa-CGUCGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 76420 | 0.66 | 0.999639 |
Target: 5'- cGGCGGUU--------GCUgugGCGGCGGu -3' miRNA: 3'- -CCGCCAAuauuaguuUGGa--CGUCGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 44073 | 0.66 | 0.999291 |
Target: 5'- cGGCGGcgAUGucauggacgCGGGCguUUGCGGCGGc -3' miRNA: 3'- -CCGCCaaUAUua-------GUUUG--GACGUCGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 91281 | 0.66 | 0.999291 |
Target: 5'- cGCGGguagcgUGgagguGUCGAGCggcGCAGCGGg -3' miRNA: 3'- cCGCCa-----AUau---UAGUUUGga-CGUCGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 94816 | 0.66 | 0.999291 |
Target: 5'- uGCGGUggAUGcgGUCuugcGCCUGCAguucgaucuGCGGg -3' miRNA: 3'- cCGCCAa-UAU--UAGuu--UGGACGU---------CGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 46714 | 0.67 | 0.999141 |
Target: 5'- uGGCGccgcaGUUGUAAUUguAAACCcucuuauaguagcggGCAGCGGc -3' miRNA: 3'- -CCGC-----CAAUAUUAG--UUUGGa--------------CGUCGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 97142 | 0.67 | 0.998403 |
Target: 5'- cGCGGUguUGAUCGcgAACUUGguGCa- -3' miRNA: 3'- cCGCCAauAUUAGU--UUGGACguCGcc -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 94240 | 0.68 | 0.997238 |
Target: 5'- cGGCGGgcgccaaAGUCAAGCUgcguuUGCAGUGc -3' miRNA: 3'- -CCGCCaaua---UUAGUUUGG-----ACGUCGCc -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 126978 | 0.68 | 0.996719 |
Target: 5'- aGCGG--GUGGUCGAuaACCaGCGGCGu -3' miRNA: 3'- cCGCCaaUAUUAGUU--UGGaCGUCGCc -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 12416 | 0.68 | 0.996719 |
Target: 5'- cGuCGGUguucGUGGUCGuGCCgGUGGCGGg -3' miRNA: 3'- cC-GCCAa---UAUUAGUuUGGaCGUCGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 16291 | 0.69 | 0.99466 |
Target: 5'- cGCGGUUGUAAaCGuGCCgGCAGgCGu -3' miRNA: 3'- cCGCCAAUAUUaGUuUGGaCGUC-GCc -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 25150 | 0.69 | 0.994577 |
Target: 5'- cGGCGcGUg-----CAAACCUGCAcguucuuGCGGc -3' miRNA: 3'- -CCGC-CAauauuaGUUUGGACGU-------CGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 93704 | 0.69 | 0.992782 |
Target: 5'- cGCGGccgagcUAGUCAucGACUUGguGCGGc -3' miRNA: 3'- cCGCCaau---AUUAGU--UUGGACguCGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 43992 | 0.69 | 0.992782 |
Target: 5'- aGGCGGUgauuggCGAcCCUGCuGCGu -3' miRNA: 3'- -CCGCCAauauuaGUUuGGACGuCGCc -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 124349 | 0.69 | 0.990412 |
Target: 5'- aGGCGGcgaccgcgAAgacCGGACCgGCGGCGGc -3' miRNA: 3'- -CCGCCaaua----UUa--GUUUGGaCGUCGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 76375 | 0.69 | 0.990144 |
Target: 5'- cGGCGGUUGcugcggcggCGGuugCUGCGGCGGc -3' miRNA: 3'- -CCGCCAAUauua-----GUUug-GACGUCGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 8128 | 0.69 | 0.989872 |
Target: 5'- cGGCGcagcug--CAAGCCaucUGCAGCGGg -3' miRNA: 3'- -CCGCcaauauuaGUUUGG---ACGUCGCC- -5' |
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21183 | 5' | -47.6 | NC_004778.3 | + | 121384 | 0.7 | 0.989017 |
Target: 5'- cGCGuUUAUGAUC-AGCCcGCGGCGa -3' miRNA: 3'- cCGCcAAUAUUAGuUUGGaCGUCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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