miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21183 5' -47.6 NC_004778.3 + 112410 0.66 0.999671
Target:  5'- aGGCGGcacguaGUAAUCAucuucgcucgacgcgGGCC-GCAGCGu -3'
miRNA:   3'- -CCGCCaa----UAUUAGU---------------UUGGaCGUCGCc -5'
21183 5' -47.6 NC_004778.3 + 99930 0.66 0.999639
Target:  5'- cGGC-GUUGUAAUUAAAaaCUGguGCGa -3'
miRNA:   3'- -CCGcCAAUAUUAGUUUg-GACguCGCc -5'
21183 5' -47.6 NC_004778.3 + 12932 0.66 0.999639
Target:  5'- uGCGGUagcAGUC-AACCgcGUAGCGGu -3'
miRNA:   3'- cCGCCAauaUUAGuUUGGa-CGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 76420 0.66 0.999639
Target:  5'- cGGCGGUU--------GCUgugGCGGCGGu -3'
miRNA:   3'- -CCGCCAAuauuaguuUGGa--CGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 44073 0.66 0.999291
Target:  5'- cGGCGGcgAUGucauggacgCGGGCguUUGCGGCGGc -3'
miRNA:   3'- -CCGCCaaUAUua-------GUUUG--GACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 91281 0.66 0.999291
Target:  5'- cGCGGguagcgUGgagguGUCGAGCggcGCAGCGGg -3'
miRNA:   3'- cCGCCa-----AUau---UAGUUUGga-CGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 94816 0.66 0.999291
Target:  5'- uGCGGUggAUGcgGUCuugcGCCUGCAguucgaucuGCGGg -3'
miRNA:   3'- cCGCCAa-UAU--UAGuu--UGGACGU---------CGCC- -5'
21183 5' -47.6 NC_004778.3 + 46714 0.67 0.999141
Target:  5'- uGGCGccgcaGUUGUAAUUguAAACCcucuuauaguagcggGCAGCGGc -3'
miRNA:   3'- -CCGC-----CAAUAUUAG--UUUGGa--------------CGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 97142 0.67 0.998403
Target:  5'- cGCGGUguUGAUCGcgAACUUGguGCa- -3'
miRNA:   3'- cCGCCAauAUUAGU--UUGGACguCGcc -5'
21183 5' -47.6 NC_004778.3 + 94240 0.68 0.997238
Target:  5'- cGGCGGgcgccaaAGUCAAGCUgcguuUGCAGUGc -3'
miRNA:   3'- -CCGCCaaua---UUAGUUUGG-----ACGUCGCc -5'
21183 5' -47.6 NC_004778.3 + 126978 0.68 0.996719
Target:  5'- aGCGG--GUGGUCGAuaACCaGCGGCGu -3'
miRNA:   3'- cCGCCaaUAUUAGUU--UGGaCGUCGCc -5'
21183 5' -47.6 NC_004778.3 + 12416 0.68 0.996719
Target:  5'- cGuCGGUguucGUGGUCGuGCCgGUGGCGGg -3'
miRNA:   3'- cC-GCCAa---UAUUAGUuUGGaCGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 16291 0.69 0.99466
Target:  5'- cGCGGUUGUAAaCGuGCCgGCAGgCGu -3'
miRNA:   3'- cCGCCAAUAUUaGUuUGGaCGUC-GCc -5'
21183 5' -47.6 NC_004778.3 + 25150 0.69 0.994577
Target:  5'- cGGCGcGUg-----CAAACCUGCAcguucuuGCGGc -3'
miRNA:   3'- -CCGC-CAauauuaGUUUGGACGU-------CGCC- -5'
21183 5' -47.6 NC_004778.3 + 93704 0.69 0.992782
Target:  5'- cGCGGccgagcUAGUCAucGACUUGguGCGGc -3'
miRNA:   3'- cCGCCaau---AUUAGU--UUGGACguCGCC- -5'
21183 5' -47.6 NC_004778.3 + 43992 0.69 0.992782
Target:  5'- aGGCGGUgauuggCGAcCCUGCuGCGu -3'
miRNA:   3'- -CCGCCAauauuaGUUuGGACGuCGCc -5'
21183 5' -47.6 NC_004778.3 + 124349 0.69 0.990412
Target:  5'- aGGCGGcgaccgcgAAgacCGGACCgGCGGCGGc -3'
miRNA:   3'- -CCGCCaaua----UUa--GUUUGGaCGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 76375 0.69 0.990144
Target:  5'- cGGCGGUUGcugcggcggCGGuugCUGCGGCGGc -3'
miRNA:   3'- -CCGCCAAUauua-----GUUug-GACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 8128 0.69 0.989872
Target:  5'- cGGCGcagcug--CAAGCCaucUGCAGCGGg -3'
miRNA:   3'- -CCGCcaauauuaGUUUGG---ACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 121384 0.7 0.989017
Target:  5'- cGCGuUUAUGAUC-AGCCcGCGGCGa -3'
miRNA:   3'- cCGCcAAUAUUAGuUUGGaCGUCGCc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.