miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 122635 1.11 0.005364
Target:  5'- uGUUUCCGCGCGACGUGACCAAACACCc -3'
miRNA:   3'- -CAAAGGCGCGCUGCACUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 79221 0.8 0.415733
Target:  5'- ---aCgGCGCGugGUGACCGucgcGCGCCa -3'
miRNA:   3'- caaaGgCGCGCugCACUGGUu---UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 81746 0.79 0.481764
Target:  5'- --aUCCgGCGCGGCGgguggcgGACCGAcuGCGCCg -3'
miRNA:   3'- caaAGG-CGCGCUGCa------CUGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 80135 0.77 0.573287
Target:  5'- ---gUCGCGCGACGgGACgGGACACUg -3'
miRNA:   3'- caaaGGCGCGCUGCaCUGgUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 38257 0.76 0.604828
Target:  5'- --aUCCGUGCG-CGUGAacgCGAGCGCCc -3'
miRNA:   3'- caaAGGCGCGCuGCACUg--GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 2389 0.75 0.667208
Target:  5'- -cUUCCGCGCG--GUGGCCGAcgugcccGCGCCc -3'
miRNA:   3'- caAAGGCGCGCugCACUGGUU-------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95000 0.75 0.678778
Target:  5'- cUUUCCGCGCGcgcCGUGcGCCGAcgggcagguGCGCCu -3'
miRNA:   3'- cAAAGGCGCGCu--GCAC-UGGUU---------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95462 0.75 0.696556
Target:  5'- ---cCCGCacccCGACGUGACCGAaauuucguuggccgGCACCg -3'
miRNA:   3'- caaaGGCGc---GCUGCACUGGUU--------------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 47405 0.75 0.699677
Target:  5'- ----aCGCGCGcGCGUgGACCAcGCGCCa -3'
miRNA:   3'- caaagGCGCGC-UGCA-CUGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 87110 0.74 0.720334
Target:  5'- -gUUCCGCGCGGCGacauaagaUGG-CAAACAUCg -3'
miRNA:   3'- caAAGGCGCGCUGC--------ACUgGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 69472 0.74 0.720334
Target:  5'- ---aCCgGCGCGACGacacgccgggUGACaCAAGCGCCa -3'
miRNA:   3'- caaaGG-CGCGCUGC----------ACUG-GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 3223 0.74 0.720334
Target:  5'- --gUCCucgugGCGCGcCGUGAUCAcgGACACCa -3'
miRNA:   3'- caaAGG-----CGCGCuGCACUGGU--UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 50220 0.74 0.750687
Target:  5'- ----gCGCGCGACGgucACCAcGCGCCg -3'
miRNA:   3'- caaagGCGCGCUGCac-UGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 79893 0.73 0.780036
Target:  5'- -cUUCCGCGaCGGCaacuuuugGUGGCCAAACAa- -3'
miRNA:   3'- caAAGGCGC-GCUG--------CACUGGUUUGUgg -5'
21186 3' -51.3 NC_004778.3 + 4048 0.73 0.780036
Target:  5'- --gUUCGC-CGGCGggcaGGCCGAGCGCCu -3'
miRNA:   3'- caaAGGCGcGCUGCa---CUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 32269 0.73 0.789549
Target:  5'- ---aCCGCGC-ACGcUGGCCGgcGGCGCCg -3'
miRNA:   3'- caaaGGCGCGcUGC-ACUGGU--UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 17172 0.73 0.79891
Target:  5'- -aUUCCGCGCGGgcacCGcGACUgcacGGACGCCa -3'
miRNA:   3'- caAAGGCGCGCU----GCaCUGG----UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 55277 0.72 0.818032
Target:  5'- -gUUCCGCGCagcgccagcacguuCGUGACCGAGCAa- -3'
miRNA:   3'- caAAGGCGCGcu------------GCACUGGUUUGUgg -5'
21186 3' -51.3 NC_004778.3 + 76287 0.72 0.843947
Target:  5'- ---gCCGCGCGcCGUGAacggcucgcauuuggCAAGCGCCg -3'
miRNA:   3'- caaaGGCGCGCuGCACUg--------------GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 86362 0.71 0.859416
Target:  5'- --aUCgGCGCGACc---CCAAGCACCu -3'
miRNA:   3'- caaAGgCGCGCUGcacuGGUUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.