miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 86362 0.71 0.859416
Target:  5'- --aUCgGCGCGACc---CCAAGCACCu -3'
miRNA:   3'- caaAGgCGCGCUGcacuGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 38115 0.71 0.859416
Target:  5'- ----aCGCGuUGACGUGugCGuGCGCCa -3'
miRNA:   3'- caaagGCGC-GCUGCACugGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 5956 0.71 0.874842
Target:  5'- -cUUCCuCGCuGAUGUGACCGuGCGCg -3'
miRNA:   3'- caAAGGcGCG-CUGCACUGGUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 56993 0.71 0.88221
Target:  5'- ---cCUGUGCGGCG-GGCCAGGCgaguuuGCCg -3'
miRNA:   3'- caaaGGCGCGCUGCaCUGGUUUG------UGG- -5'
21186 3' -51.3 NC_004778.3 + 120047 0.71 0.88221
Target:  5'- aGUUUgCGCGCGugGUGAaauugguCGCCc -3'
miRNA:   3'- -CAAAgGCGCGCugCACUgguuu--GUGG- -5'
21186 3' -51.3 NC_004778.3 + 21630 0.71 0.88221
Target:  5'- cGUUUCC-UGCG-CGUuGCCAAACGCUa -3'
miRNA:   3'- -CAAAGGcGCGCuGCAcUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 38299 0.71 0.88221
Target:  5'- ---gCCaGCGCGcACGcGACCGcGCGCCg -3'
miRNA:   3'- caaaGG-CGCGC-UGCaCUGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 61660 0.71 0.88221
Target:  5'- ---gCCGCGCGcAUGcugGGCCAGcCGCCg -3'
miRNA:   3'- caaaGGCGCGC-UGCa--CUGGUUuGUGG- -5'
21186 3' -51.3 NC_004778.3 + 21747 0.7 0.896228
Target:  5'- ---aCCGCGCGugGcGGCCuccACGCg -3'
miRNA:   3'- caaaGGCGCGCugCaCUGGuu-UGUGg -5'
21186 3' -51.3 NC_004778.3 + 95776 0.7 0.90287
Target:  5'- --aUCCGCGCGGCagcgcgccGGCCGcgcuGCGCCc -3'
miRNA:   3'- caaAGGCGCGCUGca------CUGGUu---UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 71193 0.7 0.90287
Target:  5'- -aUUCUGCGC-ACacGACCAAAUGCCg -3'
miRNA:   3'- caAAGGCGCGcUGcaCUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 44157 0.7 0.90287
Target:  5'- cGUUUgCgGCgGCGACGgcaugGACgCGGGCGCCg -3'
miRNA:   3'- -CAAA-GgCG-CGCUGCa----CUG-GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 18286 0.7 0.915402
Target:  5'- uGUUUCCGCGCGA-GUuuCCcGACgACCu -3'
miRNA:   3'- -CAAAGGCGCGCUgCAcuGGuUUG-UGG- -5'
21186 3' -51.3 NC_004778.3 + 91650 0.7 0.915402
Target:  5'- ---aCCGCGCGuccuuuACGUuuGACCGAACaaggGCCg -3'
miRNA:   3'- caaaGGCGCGC------UGCA--CUGGUUUG----UGG- -5'
21186 3' -51.3 NC_004778.3 + 15457 0.7 0.915402
Target:  5'- --cUCCGCGCGACcacgccaaaGUGcuGCCGcGCAUCu -3'
miRNA:   3'- caaAGGCGCGCUG---------CAC--UGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 74119 0.7 0.915402
Target:  5'- ---gCUGCGCGGCGUGcCCGAuCAUUu -3'
miRNA:   3'- caaaGGCGCGCUGCACuGGUUuGUGG- -5'
21186 3' -51.3 NC_004778.3 + 34392 0.7 0.915402
Target:  5'- aGUUUuuGCaGCu-CGUGGCCGGGCugCu -3'
miRNA:   3'- -CAAAggCG-CGcuGCACUGGUUUGugG- -5'
21186 3' -51.3 NC_004778.3 + 28825 0.7 0.921287
Target:  5'- -aUUgCGCGCGAUGcugGACCAgcuacAACugCa -3'
miRNA:   3'- caAAgGCGCGCUGCa--CUGGU-----UUGugG- -5'
21186 3' -51.3 NC_004778.3 + 98189 0.69 0.926917
Target:  5'- aGUUUCUcgGCGCGAgGUGcgcgcGCCAcggacagcAACGCCu -3'
miRNA:   3'- -CAAAGG--CGCGCUgCAC-----UGGU--------UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 65259 0.69 0.926917
Target:  5'- uGUUUCgGCGCgcaauuguacGACGUGAUgGAcgcccaccGCGCCa -3'
miRNA:   3'- -CAAAGgCGCG----------CUGCACUGgUU--------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.