Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21186 | 3' | -51.3 | NC_004778.3 | + | 52627 | 0.67 | 0.975157 |
Target: 5'- ---aUCGCGCGGCGaauagucGCgGAACGCCu -3' miRNA: 3'- caaaGGCGCGCUGCac-----UGgUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 21254 | 0.67 | 0.975157 |
Target: 5'- --gUCCGCGCGGCagguUGAgCAgAugGCCc -3' miRNA: 3'- caaAGGCGCGCUGc---ACUgGU-UugUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 119383 | 0.68 | 0.969454 |
Target: 5'- aGUUUaCUGCGuCGGaguaUGUGACCGGuuuucGCGCCg -3' miRNA: 3'- -CAAA-GGCGC-GCU----GCACUGGUU-----UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 7147 | 0.68 | 0.969454 |
Target: 5'- --aUCCGUcucggcggGCGGCGc-GCCGAGCACUa -3' miRNA: 3'- caaAGGCG--------CGCUGCacUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 8493 | 0.68 | 0.966276 |
Target: 5'- -gUUCCgcaaGCGCGGCGUGGuagCAGACgaaACCa -3' miRNA: 3'- caAAGG----CGCGCUGCACUg--GUUUG---UGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 80718 | 0.68 | 0.966276 |
Target: 5'- ----aCGCaC-AUGUGGCCGAGCACCg -3' miRNA: 3'- caaagGCGcGcUGCACUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 33466 | 0.68 | 0.962873 |
Target: 5'- --gUCCGCacgGCGGCGUGcucGCCGacGACAUg -3' miRNA: 3'- caaAGGCG---CGCUGCAC---UGGU--UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 32084 | 0.68 | 0.962873 |
Target: 5'- ----aCGUGCGGCGUGugCGAauuuaAUACUa -3' miRNA: 3'- caaagGCGCGCUGCACugGUU-----UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 81224 | 0.68 | 0.959237 |
Target: 5'- ---aCUGCGUGAUGcGACUguucaaAAGCACCa -3' miRNA: 3'- caaaGGCGCGCUGCaCUGG------UUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 43365 | 0.68 | 0.959237 |
Target: 5'- -aUUUCGCGcCGugGUGuuGCCGcAGCACg -3' miRNA: 3'- caAAGGCGC-GCugCAC--UGGU-UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 107677 | 0.68 | 0.959237 |
Target: 5'- ---gUCGCGCGACGaaACCuuGCGCg -3' miRNA: 3'- caaaGGCGCGCUGCacUGGuuUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 18308 | 0.68 | 0.959237 |
Target: 5'- --gUCCGCGUGuu-UGACCAcGCGCa -3' miRNA: 3'- caaAGGCGCGCugcACUGGUuUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 110078 | 0.68 | 0.958861 |
Target: 5'- gGUUUCCGggcaCGCGuuuguucaaaacgGCGUGcgcGCCGAGCGCUu -3' miRNA: 3'- -CAAAGGC----GCGC-------------UGCAC---UGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 6772 | 0.68 | 0.955364 |
Target: 5'- -cUUCCGCGCGGCucaUGaacacuGCCAGAUGCg -3' miRNA: 3'- caAAGGCGCGCUGc--AC------UGGUUUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 76287 | 0.72 | 0.843947 |
Target: 5'- ---gCCGCGCGcCGUGAacggcucgcauuuggCAAGCGCCg -3' miRNA: 3'- caaaGGCGCGCuGCACUg--------------GUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 50220 | 0.74 | 0.750687 |
Target: 5'- ----gCGCGCGACGgucACCAcGCGCCg -3' miRNA: 3'- caaagGCGCGCUGCac-UGGUuUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 4048 | 0.73 | 0.780036 |
Target: 5'- --gUUCGC-CGGCGggcaGGCCGAGCGCCu -3' miRNA: 3'- caaAGGCGcGCUGCa---CUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 32269 | 0.73 | 0.789549 |
Target: 5'- ---aCCGCGC-ACGcUGGCCGgcGGCGCCg -3' miRNA: 3'- caaaGGCGCGcUGC-ACUGGU--UUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 17172 | 0.73 | 0.79891 |
Target: 5'- -aUUCCGCGCGGgcacCGcGACUgcacGGACGCCa -3' miRNA: 3'- caAAGGCGCGCU----GCaCUGG----UUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 86362 | 0.71 | 0.859416 |
Target: 5'- --aUCgGCGCGACc---CCAAGCACCu -3' miRNA: 3'- caaAGgCGCGCUGcacuGGUUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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