miRNA display CGI


Results 21 - 40 of 114 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 52627 0.67 0.975157
Target:  5'- ---aUCGCGCGGCGaauagucGCgGAACGCCu -3'
miRNA:   3'- caaaGGCGCGCUGCac-----UGgUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 21254 0.67 0.975157
Target:  5'- --gUCCGCGCGGCagguUGAgCAgAugGCCc -3'
miRNA:   3'- caaAGGCGCGCUGc---ACUgGU-UugUGG- -5'
21186 3' -51.3 NC_004778.3 + 119383 0.68 0.969454
Target:  5'- aGUUUaCUGCGuCGGaguaUGUGACCGGuuuucGCGCCg -3'
miRNA:   3'- -CAAA-GGCGC-GCU----GCACUGGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 7147 0.68 0.969454
Target:  5'- --aUCCGUcucggcggGCGGCGc-GCCGAGCACUa -3'
miRNA:   3'- caaAGGCG--------CGCUGCacUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 8493 0.68 0.966276
Target:  5'- -gUUCCgcaaGCGCGGCGUGGuagCAGACgaaACCa -3'
miRNA:   3'- caAAGG----CGCGCUGCACUg--GUUUG---UGG- -5'
21186 3' -51.3 NC_004778.3 + 80718 0.68 0.966276
Target:  5'- ----aCGCaC-AUGUGGCCGAGCACCg -3'
miRNA:   3'- caaagGCGcGcUGCACUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 33466 0.68 0.962873
Target:  5'- --gUCCGCacgGCGGCGUGcucGCCGacGACAUg -3'
miRNA:   3'- caaAGGCG---CGCUGCAC---UGGU--UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 32084 0.68 0.962873
Target:  5'- ----aCGUGCGGCGUGugCGAauuuaAUACUa -3'
miRNA:   3'- caaagGCGCGCUGCACugGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 81224 0.68 0.959237
Target:  5'- ---aCUGCGUGAUGcGACUguucaaAAGCACCa -3'
miRNA:   3'- caaaGGCGCGCUGCaCUGG------UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 43365 0.68 0.959237
Target:  5'- -aUUUCGCGcCGugGUGuuGCCGcAGCACg -3'
miRNA:   3'- caAAGGCGC-GCugCAC--UGGU-UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 107677 0.68 0.959237
Target:  5'- ---gUCGCGCGACGaaACCuuGCGCg -3'
miRNA:   3'- caaaGGCGCGCUGCacUGGuuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 18308 0.68 0.959237
Target:  5'- --gUCCGCGUGuu-UGACCAcGCGCa -3'
miRNA:   3'- caaAGGCGCGCugcACUGGUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 110078 0.68 0.958861
Target:  5'- gGUUUCCGggcaCGCGuuuguucaaaacgGCGUGcgcGCCGAGCGCUu -3'
miRNA:   3'- -CAAAGGC----GCGC-------------UGCAC---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 6772 0.68 0.955364
Target:  5'- -cUUCCGCGCGGCucaUGaacacuGCCAGAUGCg -3'
miRNA:   3'- caAAGGCGCGCUGc--AC------UGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 76287 0.72 0.843947
Target:  5'- ---gCCGCGCGcCGUGAacggcucgcauuuggCAAGCGCCg -3'
miRNA:   3'- caaaGGCGCGCuGCACUg--------------GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 50220 0.74 0.750687
Target:  5'- ----gCGCGCGACGgucACCAcGCGCCg -3'
miRNA:   3'- caaagGCGCGCUGCac-UGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 4048 0.73 0.780036
Target:  5'- --gUUCGC-CGGCGggcaGGCCGAGCGCCu -3'
miRNA:   3'- caaAGGCGcGCUGCa---CUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 32269 0.73 0.789549
Target:  5'- ---aCCGCGC-ACGcUGGCCGgcGGCGCCg -3'
miRNA:   3'- caaaGGCGCGcUGC-ACUGGU--UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 17172 0.73 0.79891
Target:  5'- -aUUCCGCGCGGgcacCGcGACUgcacGGACGCCa -3'
miRNA:   3'- caAAGGCGCGCU----GCaCUGG----UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 86362 0.71 0.859416
Target:  5'- --aUCgGCGCGACc---CCAAGCACCu -3'
miRNA:   3'- caaAGgCGCGCUGcacuGGUUUGUGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.