miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 26022 0.68 0.964942
Target:  5'- --gUCCGCcaacauggcggcaCGACGUGuccGCCAAACACg -3'
miRNA:   3'- caaAGGCGc------------GCUGCAC---UGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 72640 0.68 0.959237
Target:  5'- -cUUCCGuUGCGACaUGACgCAGAUgggGCCg -3'
miRNA:   3'- caAAGGC-GCGCUGcACUG-GUUUG---UGG- -5'
21186 3' -51.3 NC_004778.3 + 67821 0.68 0.959237
Target:  5'- ---gCUGCGCGGC---GCCAAACGCUu -3'
miRNA:   3'- caaaGGCGCGCUGcacUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 55995 0.68 0.959237
Target:  5'- aGUggcgCCGCGuUGGCGUcGAUUAGACACa -3'
miRNA:   3'- -CAaa--GGCGC-GCUGCA-CUGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 95642 0.68 0.958861
Target:  5'- --gUCCGUGUaaugguucuuuauGACGUGcgcuucAUCGAGCACCa -3'
miRNA:   3'- caaAGGCGCG-------------CUGCAC------UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 79221 0.8 0.415733
Target:  5'- ---aCgGCGCGugGUGACCGucgcGCGCCa -3'
miRNA:   3'- caaaGgCGCGCugCACUGGUu---UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 38257 0.76 0.604828
Target:  5'- --aUCCGUGCG-CGUGAacgCGAGCGCCc -3'
miRNA:   3'- caaAGGCGCGCuGCACUg--GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 87110 0.74 0.720334
Target:  5'- -gUUCCGCGCGGCGacauaagaUGG-CAAACAUCg -3'
miRNA:   3'- caAAGGCGCGCUGC--------ACUgGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 79893 0.73 0.780036
Target:  5'- -cUUCCGCGaCGGCaacuuuugGUGGCCAAACAa- -3'
miRNA:   3'- caAAGGCGC-GCUG--------CACUGGUUUGUgg -5'
21186 3' -51.3 NC_004778.3 + 55277 0.72 0.818032
Target:  5'- -gUUCCGCGCagcgccagcacguuCGUGACCGAGCAa- -3'
miRNA:   3'- caAAGGCGCGcu------------GCACUGGUUUGUgg -5'
21186 3' -51.3 NC_004778.3 + 38115 0.71 0.859416
Target:  5'- ----aCGCGuUGACGUGugCGuGCGCCa -3'
miRNA:   3'- caaagGCGC-GCUGCACugGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 120047 0.71 0.88221
Target:  5'- aGUUUgCGCGCGugGUGAaauugguCGCCc -3'
miRNA:   3'- -CAAAgGCGCGCugCACUgguuu--GUGG- -5'
21186 3' -51.3 NC_004778.3 + 21630 0.71 0.88221
Target:  5'- cGUUUCC-UGCG-CGUuGCCAAACGCUa -3'
miRNA:   3'- -CAAAGGcGCGCuGCAcUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 21747 0.7 0.896228
Target:  5'- ---aCCGCGCGugGcGGCCuccACGCg -3'
miRNA:   3'- caaaGGCGCGCugCaCUGGuu-UGUGg -5'
21186 3' -51.3 NC_004778.3 + 44157 0.7 0.90287
Target:  5'- cGUUUgCgGCgGCGACGgcaugGACgCGGGCGCCg -3'
miRNA:   3'- -CAAA-GgCG-CGCUGCa----CUG-GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 71193 0.7 0.90287
Target:  5'- -aUUCUGCGC-ACacGACCAAAUGCCg -3'
miRNA:   3'- caAAGGCGCGcUGcaCUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 124766 0.69 0.946886
Target:  5'- --cUCCGUGCGgccGCGUuAUCGAcgGCACCa -3'
miRNA:   3'- caaAGGCGCGC---UGCAcUGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 57923 0.69 0.942274
Target:  5'- -cUUCCGC-CGACacccUGGCCA-ACGCCu -3'
miRNA:   3'- caAAGGCGcGCUGc---ACUGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 4869 0.69 0.942274
Target:  5'- -gUUgCGCGCGcgccuACGUGACUcgGCGCg -3'
miRNA:   3'- caAAgGCGCGC-----UGCACUGGuuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 91650 0.7 0.915402
Target:  5'- ---aCCGCGCGuccuuuACGUuuGACCGAACaaggGCCg -3'
miRNA:   3'- caaaGGCGCGC------UGCA--CUGGUUUG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.