miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 63689 0.66 0.990455
Target:  5'- ---aCCGCcCGGCucgcUGcGCCAAACGCCg -3'
miRNA:   3'- caaaGGCGcGCUGc---AC-UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 91590 0.68 0.966276
Target:  5'- --gUCUGCGCGugcGCGUcGA-UAAGCACCa -3'
miRNA:   3'- caaAGGCGCGC---UGCA-CUgGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 26022 0.68 0.964942
Target:  5'- --gUCCGCcaacauggcggcaCGACGUGuccGCCAAACACg -3'
miRNA:   3'- caaAGGCGc------------GCUGCAC---UGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 122635 1.11 0.005364
Target:  5'- uGUUUCCGCGCGACGUGACCAAACACCc -3'
miRNA:   3'- -CAAAGGCGCGCUGCACUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95181 0.66 0.989109
Target:  5'- --aUgCGCGCGugcuccuugaACaUGGCCGAACACUu -3'
miRNA:   3'- caaAgGCGCGC----------UGcACUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 15390 0.66 0.989109
Target:  5'- ---gCCGCGCGGCcaaccuaaaGACCAAAgACg -3'
miRNA:   3'- caaaGGCGCGCUGca-------CUGGUUUgUGg -5'
21186 3' -51.3 NC_004778.3 + 127208 0.66 0.985976
Target:  5'- --gUCCGCG-GGCGUGACguuucugucgauCAGcucgcGCACCc -3'
miRNA:   3'- caaAGGCGCgCUGCACUG------------GUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 92975 0.66 0.985976
Target:  5'- -----aGCGCGugGUGGcgcCCAccACACCg -3'
miRNA:   3'- caaaggCGCGCugCACU---GGUu-UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 124997 0.67 0.982196
Target:  5'- ---gCCGCGCGAUuccgGACgaAGACACUg -3'
miRNA:   3'- caaaGGCGCGCUGca--CUGg-UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 103066 0.68 0.966276
Target:  5'- ----gUGUGCuACGUGACCAAACuggauGCCg -3'
miRNA:   3'- caaagGCGCGcUGCACUGGUUUG-----UGG- -5'
21186 3' -51.3 NC_004778.3 + 65299 0.67 0.98178
Target:  5'- -----gGCGCGACGcgcugagUGACCGuugcuugGGCGCCg -3'
miRNA:   3'- caaaggCGCGCUGC-------ACUGGU-------UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 41220 0.66 0.984172
Target:  5'- -gUUUCGCGUuuGACGggcGGCC--GCGCCg -3'
miRNA:   3'- caAAGGCGCG--CUGCa--CUGGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 40759 0.66 0.990455
Target:  5'- ---gCUGCGCGGCGacaucccGuCCAAuuGCGCCa -3'
miRNA:   3'- caaaGGCGCGCUGCa------CuGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 114914 0.67 0.977698
Target:  5'- --gUCCgGCaCGACGUGACgCAcGCGCg -3'
miRNA:   3'- caaAGG-CGcGCUGCACUG-GUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 65968 0.66 0.990327
Target:  5'- ---cCCGCGCcgaagaaGGCGcuuucGCCGAACGCCc -3'
miRNA:   3'- caaaGGCGCG-------CUGCac---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 119188 0.66 0.984172
Target:  5'- ---cCCGCGCGcaaucggcGCGcUGcgcACUAAACACCu -3'
miRNA:   3'- caaaGGCGCGC--------UGC-AC---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 46184 0.67 0.977698
Target:  5'- -gUUCCGCGCGucugcaacaACGcaGCCAAuCGCCc -3'
miRNA:   3'- caAAGGCGCGC---------UGCacUGGUUuGUGG- -5'
21186 3' -51.3 NC_004778.3 + 90494 0.68 0.966276
Target:  5'- ----gUGCGCGGCGgcGACC--ACGCCg -3'
miRNA:   3'- caaagGCGCGCUGCa-CUGGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 118053 0.66 0.989109
Target:  5'- --aUuuGCGCcuuGCGUG-CCAAGCugCc -3'
miRNA:   3'- caaAggCGCGc--UGCACuGGUUUGugG- -5'
21186 3' -51.3 NC_004778.3 + 34216 0.66 0.987619
Target:  5'- --gUCCGCgGCGAUuUGGuuGAACACg -3'
miRNA:   3'- caaAGGCG-CGCUGcACUggUUUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.