miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 2389 0.75 0.667208
Target:  5'- -cUUCCGCGCG--GUGGCCGAcgugcccGCGCCc -3'
miRNA:   3'- caAAGGCGCGCugCACUGGUU-------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 3223 0.74 0.720334
Target:  5'- --gUCCucgugGCGCGcCGUGAUCAcgGACACCa -3'
miRNA:   3'- caaAGG-----CGCGCuGCACUGGU--UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 4048 0.73 0.780036
Target:  5'- --gUUCGC-CGGCGggcaGGCCGAGCGCCu -3'
miRNA:   3'- caaAGGCGcGCUGCa---CUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 4869 0.69 0.942274
Target:  5'- -gUUgCGCGCGcgccuACGUGACUcgGCGCg -3'
miRNA:   3'- caAAgGCGCGC-----UGCACUGGuuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 5956 0.71 0.874842
Target:  5'- -cUUCCuCGCuGAUGUGACCGuGCGCg -3'
miRNA:   3'- caAAGGcGCG-CUGCACUGGUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 6772 0.68 0.955364
Target:  5'- -cUUCCGCGCGGCucaUGaacacuGCCAGAUGCg -3'
miRNA:   3'- caAAGGCGCGCUGc--AC------UGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 7147 0.68 0.969454
Target:  5'- --aUCCGUcucggcggGCGGCGc-GCCGAGCACUa -3'
miRNA:   3'- caaAGGCG--------CGCUGCacUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 8493 0.68 0.966276
Target:  5'- -gUUCCgcaaGCGCGGCGUGGuagCAGACgaaACCa -3'
miRNA:   3'- caAAGG----CGCGCUGCACUg--GUUUG---UGG- -5'
21186 3' -51.3 NC_004778.3 + 10705 0.69 0.93741
Target:  5'- uGUgcgCCGcCGCGcCGaGGCCAAGCGCa -3'
miRNA:   3'- -CAaa-GGC-GCGCuGCaCUGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 10745 0.66 0.990455
Target:  5'- --cUCCGCGgGcugcCGUGugC--GCGCCg -3'
miRNA:   3'- caaAGGCGCgCu---GCACugGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 13417 0.66 0.985976
Target:  5'- aUUUCCGCcCGuuUGUGGCacAGCACCa -3'
miRNA:   3'- cAAAGGCGcGCu-GCACUGguUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 14283 0.66 0.984172
Target:  5'- ---gCCGCGaagucaACGUGGCCAccAACACg -3'
miRNA:   3'- caaaGGCGCgc----UGCACUGGU--UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 15072 0.69 0.926917
Target:  5'- --cUCCGC-C-ACGUGACCGAGCAa- -3'
miRNA:   3'- caaAGGCGcGcUGCACUGGUUUGUgg -5'
21186 3' -51.3 NC_004778.3 + 15390 0.66 0.989109
Target:  5'- ---gCCGCGCGGCcaaccuaaaGACCAAAgACg -3'
miRNA:   3'- caaaGGCGCGCUGca-------CUGGUUUgUGg -5'
21186 3' -51.3 NC_004778.3 + 15457 0.7 0.915402
Target:  5'- --cUCCGCGCGACcacgccaaaGUGcuGCCGcGCAUCu -3'
miRNA:   3'- caaAGGCGCGCUG---------CAC--UGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 17108 0.66 0.987619
Target:  5'- --gUgCGCGCGGCGcGccuACCGuggcAACGCCg -3'
miRNA:   3'- caaAgGCGCGCUGCaC---UGGU----UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 17172 0.73 0.79891
Target:  5'- -aUUCCGCGCGGgcacCGcGACUgcacGGACGCCa -3'
miRNA:   3'- caAAGGCGCGCU----GCaCUGG----UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 17604 0.67 0.982196
Target:  5'- ---aCUGCGCGAUuuUGACUAuacGGCGCCc -3'
miRNA:   3'- caaaGGCGCGCUGc-ACUGGU---UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 17859 0.69 0.932291
Target:  5'- ---aCCGCGCGccgucCGUGACUuuggcGCGCCc -3'
miRNA:   3'- caaaGGCGCGCu----GCACUGGuu---UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 18286 0.7 0.915402
Target:  5'- uGUUUCCGCGCGA-GUuuCCcGACgACCu -3'
miRNA:   3'- -CAAAGGCGCGCUgCAcuGGuUUG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.