miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 127208 0.66 0.985976
Target:  5'- --gUCCGCG-GGCGUGACguuucugucgauCAGcucgcGCACCc -3'
miRNA:   3'- caaAGGCGCgCUGCACUG------------GUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 124997 0.67 0.982196
Target:  5'- ---gCCGCGCGAUuccgGACgaAGACACUg -3'
miRNA:   3'- caaaGGCGCGCUGca--CUGg-UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 124766 0.69 0.946886
Target:  5'- --cUCCGUGCGgccGCGUuAUCGAcgGCACCa -3'
miRNA:   3'- caaAGGCGCGC---UGCAcUGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 124502 0.67 0.981989
Target:  5'- ---cCCGUGCGucgagucACGUaGGCCGAuaaacACGCCg -3'
miRNA:   3'- caaaGGCGCGC-------UGCA-CUGGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 122635 1.11 0.005364
Target:  5'- uGUUUCCGCGCGACGUGACCAAACACCc -3'
miRNA:   3'- -CAAAGGCGCGCUGCACUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 121620 0.66 0.988966
Target:  5'- ----gCGCGCGGuccacgcCGUcGGCCGAGCGCa -3'
miRNA:   3'- caaagGCGCGCU-------GCA-CUGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 120047 0.71 0.88221
Target:  5'- aGUUUgCGCGCGugGUGAaauugguCGCCc -3'
miRNA:   3'- -CAAAgGCGCGCugCACUgguuu--GUGG- -5'
21186 3' -51.3 NC_004778.3 + 119383 0.68 0.969454
Target:  5'- aGUUUaCUGCGuCGGaguaUGUGACCGGuuuucGCGCCg -3'
miRNA:   3'- -CAAA-GGCGC-GCU----GCACUGGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 119188 0.66 0.984172
Target:  5'- ---cCCGCGCGcaaucggcGCGcUGcgcACUAAACACCu -3'
miRNA:   3'- caaaGGCGCGC--------UGC-AC---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 118777 0.66 0.985976
Target:  5'- -cUUCgGgCGCGGCGcGGCCGGcgcGCACa -3'
miRNA:   3'- caAAGgC-GCGCUGCaCUGGUU---UGUGg -5'
21186 3' -51.3 NC_004778.3 + 118053 0.66 0.989109
Target:  5'- --aUuuGCGCcuuGCGUG-CCAAGCugCc -3'
miRNA:   3'- caaAggCGCGc--UGCACuGGUUUGugG- -5'
21186 3' -51.3 NC_004778.3 + 114914 0.67 0.977698
Target:  5'- --gUCCgGCaCGACGUGACgCAcGCGCg -3'
miRNA:   3'- caaAGG-CGcGCUGCACUG-GUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 110078 0.68 0.958861
Target:  5'- gGUUUCCGggcaCGCGuuuguucaaaacgGCGUGcgcGCCGAGCGCUu -3'
miRNA:   3'- -CAAAGGC----GCGC-------------UGCAC---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 107677 0.68 0.959237
Target:  5'- ---gUCGCGCGACGaaACCuuGCGCg -3'
miRNA:   3'- caaaGGCGCGCUGCacUGGuuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 103457 0.69 0.951248
Target:  5'- ----gCGUGCGACGUGcagcacGCUcAACGCCg -3'
miRNA:   3'- caaagGCGCGCUGCAC------UGGuUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 103066 0.68 0.966276
Target:  5'- ----gUGUGCuACGUGACCAAACuggauGCCg -3'
miRNA:   3'- caaagGCGCGcUGCACUGGUUUG-----UGG- -5'
21186 3' -51.3 NC_004778.3 + 98189 0.69 0.926917
Target:  5'- aGUUUCUcgGCGCGAgGUGcgcgcGCCAcggacagcAACGCCu -3'
miRNA:   3'- -CAAAGG--CGCGCUgCAC-----UGGU--------UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95776 0.7 0.90287
Target:  5'- --aUCCGCGCGGCagcgcgccGGCCGcgcuGCGCCc -3'
miRNA:   3'- caaAGGCGCGCUGca------CUGGUu---UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95642 0.68 0.958861
Target:  5'- --gUCCGUGUaaugguucuuuauGACGUGcgcuucAUCGAGCACCa -3'
miRNA:   3'- caaAGGCGCG-------------CUGCAC------UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95462 0.75 0.696556
Target:  5'- ---cCCGCacccCGACGUGACCGAaauuucguuggccgGCACCg -3'
miRNA:   3'- caaaGGCGc---GCUGCACUGGUU--------------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.