Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21186 | 3' | -51.3 | NC_004778.3 | + | 95181 | 0.66 | 0.989109 |
Target: 5'- --aUgCGCGCGugcuccuugaACaUGGCCGAACACUu -3' miRNA: 3'- caaAgGCGCGC----------UGcACUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 95000 | 0.75 | 0.678778 |
Target: 5'- cUUUCCGCGCGcgcCGUGcGCCGAcgggcagguGCGCCu -3' miRNA: 3'- cAAAGGCGCGCu--GCAC-UGGUU---------UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 92975 | 0.66 | 0.985976 |
Target: 5'- -----aGCGCGugGUGGcgcCCAccACACCg -3' miRNA: 3'- caaaggCGCGCugCACU---GGUu-UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 91650 | 0.7 | 0.915402 |
Target: 5'- ---aCCGCGCGuccuuuACGUuuGACCGAACaaggGCCg -3' miRNA: 3'- caaaGGCGCGC------UGCA--CUGGUUUG----UGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 91590 | 0.68 | 0.966276 |
Target: 5'- --gUCUGCGCGugcGCGUcGA-UAAGCACCa -3' miRNA: 3'- caaAGGCGCGC---UGCA-CUgGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 90494 | 0.68 | 0.966276 |
Target: 5'- ----gUGCGCGGCGgcGACC--ACGCCg -3' miRNA: 3'- caaagGCGCGCUGCa-CUGGuuUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 89334 | 0.66 | 0.983982 |
Target: 5'- uUUUCCGUGggccgauugcCGACGUcgcuuugugguucGACCAGACugUa -3' miRNA: 3'- cAAAGGCGC----------GCUGCA-------------CUGGUUUGugG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 87781 | 0.71 | 0.859416 |
Target: 5'- ---gUUGCGCGACGUGAUUAAucaGCGCa -3' miRNA: 3'- caaaGGCGCGCUGCACUGGUU---UGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 87110 | 0.74 | 0.720334 |
Target: 5'- -gUUCCGCGCGGCGacauaagaUGG-CAAACAUCg -3' miRNA: 3'- caAAGGCGCGCUGC--------ACUgGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 86362 | 0.71 | 0.859416 |
Target: 5'- --aUCgGCGCGACc---CCAAGCACCu -3' miRNA: 3'- caaAGgCGCGCUGcacuGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 81746 | 0.79 | 0.481764 |
Target: 5'- --aUCCgGCGCGGCGgguggcgGACCGAcuGCGCCg -3' miRNA: 3'- caaAGG-CGCGCUGCa------CUGGUU--UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 81224 | 0.68 | 0.959237 |
Target: 5'- ---aCUGCGUGAUGcGACUguucaaAAGCACCa -3' miRNA: 3'- caaaGGCGCGCUGCaCUGG------UUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 80718 | 0.68 | 0.966276 |
Target: 5'- ----aCGCaC-AUGUGGCCGAGCACCg -3' miRNA: 3'- caaagGCGcGcUGCACUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 80135 | 0.77 | 0.573287 |
Target: 5'- ---gUCGCGCGACGgGACgGGACACUg -3' miRNA: 3'- caaaGGCGCGCUGCaCUGgUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 79893 | 0.73 | 0.780036 |
Target: 5'- -cUUCCGCGaCGGCaacuuuugGUGGCCAAACAa- -3' miRNA: 3'- caAAGGCGC-GCUG--------CACUGGUUUGUgg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 79221 | 0.8 | 0.415733 |
Target: 5'- ---aCgGCGCGugGUGACCGucgcGCGCCa -3' miRNA: 3'- caaaGgCGCGCugCACUGGUu---UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 76287 | 0.72 | 0.843947 |
Target: 5'- ---gCCGCGCGcCGUGAacggcucgcauuuggCAAGCGCCg -3' miRNA: 3'- caaaGGCGCGCuGCACUg--------------GUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 74318 | 0.66 | 0.990455 |
Target: 5'- ---cUCGCGCugauaccuuacGACGUGcGCCAAaaacacgcGCACCg -3' miRNA: 3'- caaaGGCGCG-----------CUGCAC-UGGUU--------UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 74119 | 0.7 | 0.915402 |
Target: 5'- ---gCUGCGCGGCGUGcCCGAuCAUUu -3' miRNA: 3'- caaaGGCGCGCUGCACuGGUUuGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 72640 | 0.68 | 0.959237 |
Target: 5'- -cUUCCGuUGCGACaUGACgCAGAUgggGCCg -3' miRNA: 3'- caAAGGC-GCGCUGcACUG-GUUUG---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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