Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21186 | 3' | -51.3 | NC_004778.3 | + | 18308 | 0.68 | 0.959237 |
Target: 5'- --gUCCGCGUGuu-UGACCAcGCGCa -3' miRNA: 3'- caaAGGCGCGCugcACUGGUuUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 21254 | 0.67 | 0.975157 |
Target: 5'- --gUCCGCGCGGCagguUGAgCAgAugGCCc -3' miRNA: 3'- caaAGGCGCGCUGc---ACUgGU-UugUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 21630 | 0.71 | 0.88221 |
Target: 5'- cGUUUCC-UGCG-CGUuGCCAAACGCUa -3' miRNA: 3'- -CAAAGGcGCGCuGCAcUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 21747 | 0.7 | 0.896228 |
Target: 5'- ---aCCGCGCGugGcGGCCuccACGCg -3' miRNA: 3'- caaaGGCGCGCugCaCUGGuu-UGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 26022 | 0.68 | 0.964942 |
Target: 5'- --gUCCGCcaacauggcggcaCGACGUGuccGCCAAACACg -3' miRNA: 3'- caaAGGCGc------------GCUGCAC---UGGUUUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 26069 | 0.69 | 0.946886 |
Target: 5'- ---aCCGC-CGuCGUGGCCAcGGCGCUg -3' miRNA: 3'- caaaGGCGcGCuGCACUGGU-UUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 28600 | 0.66 | 0.984172 |
Target: 5'- cGUUUgCGCGUGGCGUcGACgugcggggaAGugACCa -3' miRNA: 3'- -CAAAgGCGCGCUGCA-CUGg--------UUugUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 28825 | 0.7 | 0.921287 |
Target: 5'- -aUUgCGCGCGAUGcugGACCAgcuacAACugCa -3' miRNA: 3'- caAAgGCGCGCUGCa--CUGGU-----UUGugG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 32084 | 0.68 | 0.962873 |
Target: 5'- ----aCGUGCGGCGUGugCGAauuuaAUACUa -3' miRNA: 3'- caaagGCGCGCUGCACugGUU-----UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 32269 | 0.73 | 0.789549 |
Target: 5'- ---aCCGCGC-ACGcUGGCCGgcGGCGCCg -3' miRNA: 3'- caaaGGCGCGcUGC-ACUGGU--UUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 32832 | 0.69 | 0.951248 |
Target: 5'- aGUUUCgGaCGCGgcuggccuACGUGGCC-GACAUCg -3' miRNA: 3'- -CAAAGgC-GCGC--------UGCACUGGuUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 32975 | 0.66 | 0.985976 |
Target: 5'- ---gCCGCGuCGACGUGugUAcguuuGCGuCCu -3' miRNA: 3'- caaaGGCGC-GCUGCACugGUu----UGU-GG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 33360 | 0.66 | 0.984172 |
Target: 5'- ---gCCGCggGCGACGUcgcgGACgAcGCGCCg -3' miRNA: 3'- caaaGGCG--CGCUGCA----CUGgUuUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 33466 | 0.68 | 0.962873 |
Target: 5'- --gUCCGCacgGCGGCGUGcucGCCGacGACAUg -3' miRNA: 3'- caaAGGCG---CGCUGCAC---UGGU--UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 33677 | 0.69 | 0.926917 |
Target: 5'- ---gCCGCGagugGugGUGACCAcguauGACACg -3' miRNA: 3'- caaaGGCGCg---CugCACUGGU-----UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 34216 | 0.66 | 0.987619 |
Target: 5'- --gUCCGCgGCGAUuUGGuuGAACACg -3' miRNA: 3'- caaAGGCG-CGCUGcACUggUUUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 34392 | 0.7 | 0.915402 |
Target: 5'- aGUUUuuGCaGCu-CGUGGCCGGGCugCu -3' miRNA: 3'- -CAAAggCG-CGcuGCACUGGUUUGugG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 34418 | 0.69 | 0.926917 |
Target: 5'- --cUCCggcaGCGCGGCGUGcCCGuACugCu -3' miRNA: 3'- caaAGG----CGCGCUGCACuGGUuUGugG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 38033 | 0.68 | 0.954963 |
Target: 5'- ---cUCGCGCGaACGUGuuuagauaacuacACgCAAACACCu -3' miRNA: 3'- caaaGGCGCGC-UGCAC-------------UG-GUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 38115 | 0.71 | 0.859416 |
Target: 5'- ----aCGCGuUGACGUGugCGuGCGCCa -3' miRNA: 3'- caaagGCGC-GCUGCACugGUuUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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