miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 38257 0.76 0.604828
Target:  5'- --aUCCGUGCG-CGUGAacgCGAGCGCCc -3'
miRNA:   3'- caaAGGCGCGCuGCACUg--GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 38299 0.71 0.88221
Target:  5'- ---gCCaGCGCGcACGcGACCGcGCGCCg -3'
miRNA:   3'- caaaGG-CGCGC-UGCaCUGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 40759 0.66 0.990455
Target:  5'- ---gCUGCGCGGCGacaucccGuCCAAuuGCGCCa -3'
miRNA:   3'- caaaGGCGCGCUGCa------CuGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 41220 0.66 0.984172
Target:  5'- -gUUUCGCGUuuGACGggcGGCC--GCGCCg -3'
miRNA:   3'- caAAGGCGCG--CUGCa--CUGGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 43365 0.68 0.959237
Target:  5'- -aUUUCGCGcCGugGUGuuGCCGcAGCACg -3'
miRNA:   3'- caAAGGCGC-GCugCAC--UGGU-UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 44157 0.7 0.90287
Target:  5'- cGUUUgCgGCgGCGACGgcaugGACgCGGGCGCCg -3'
miRNA:   3'- -CAAA-GgCG-CGCUGCa----CUG-GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 45209 0.68 0.959237
Target:  5'- uGUUUuuGCGCGACGaauuuAUCAAACaaguGCCg -3'
miRNA:   3'- -CAAAggCGCGCUGCac---UGGUUUG----UGG- -5'
21186 3' -51.3 NC_004778.3 + 46184 0.67 0.977698
Target:  5'- -gUUCCGCGCGucugcaacaACGcaGCCAAuCGCCc -3'
miRNA:   3'- caAAGGCGCGC---------UGCacUGGUUuGUGG- -5'
21186 3' -51.3 NC_004778.3 + 46214 0.66 0.984172
Target:  5'- uUUUUCGuCGCGGCGc-ACCAucACGCCu -3'
miRNA:   3'- cAAAGGC-GCGCUGCacUGGUu-UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 46550 0.66 0.985976
Target:  5'- ----aCGUGCGuCGUGcacGCCGuACACCu -3'
miRNA:   3'- caaagGCGCGCuGCAC---UGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 47405 0.75 0.699677
Target:  5'- ----aCGCGCGcGCGUgGACCAcGCGCCa -3'
miRNA:   3'- caaagGCGCGC-UGCA-CUGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 50220 0.74 0.750687
Target:  5'- ----gCGCGCGACGgucACCAcGCGCCg -3'
miRNA:   3'- caaagGCGCGCUGCac-UGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 52627 0.67 0.975157
Target:  5'- ---aUCGCGCGGCGaauagucGCgGAACGCCu -3'
miRNA:   3'- caaaGGCGCGCUGCac-----UGgUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 53374 0.68 0.955364
Target:  5'- aGUUUuuGCGCugUGUGGCCAaagaGACugCu -3'
miRNA:   3'- -CAAAggCGCGcuGCACUGGU----UUGugG- -5'
21186 3' -51.3 NC_004778.3 + 55277 0.72 0.818032
Target:  5'- -gUUCCGCGCagcgccagcacguuCGUGACCGAGCAa- -3'
miRNA:   3'- caAAGGCGCGcu------------GCACUGGUUUGUgg -5'
21186 3' -51.3 NC_004778.3 + 55995 0.68 0.959237
Target:  5'- aGUggcgCCGCGuUGGCGUcGAUUAGACACa -3'
miRNA:   3'- -CAaa--GGCGC-GCUGCA-CUGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 56917 0.67 0.982196
Target:  5'- --gUCCGCGCuGC-UGGCgCAAACugGCCg -3'
miRNA:   3'- caaAGGCGCGcUGcACUG-GUUUG--UGG- -5'
21186 3' -51.3 NC_004778.3 + 56993 0.71 0.88221
Target:  5'- ---cCUGUGCGGCG-GGCCAGGCgaguuuGCCg -3'
miRNA:   3'- caaaGGCGCGCUGCaCUGGUUUG------UGG- -5'
21186 3' -51.3 NC_004778.3 + 57056 0.66 0.985976
Target:  5'- -gUUCgGUGUcACGcUGACCAGgaauGCGCCg -3'
miRNA:   3'- caAAGgCGCGcUGC-ACUGGUU----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 57488 0.69 0.926917
Target:  5'- ---gCCGCGCGACGgaaaaGCCGAcaugGCGCg -3'
miRNA:   3'- caaaGGCGCGCUGCac---UGGUU----UGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.